PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93136
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 349aa    MW: 39084.7 Da    PI: 10.6299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.47.9e-152788258
           --SS-EEEEEEE--TT-S......S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
   WRKY  2 dDgynWrKYGqKevkgse......fprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
           dD ++WrKYG K++ + +        rsYYrC+++gCp++k+v  +  ++  + + Ye eH++
  93136 27 DDAHRWRKYGHKKIGKRDktsndlSERSYYRCSFEGCPARKRVGWCP-ETGHTRVWYEFEHTC 88
           79***********9543311112256*********************.89999********98 PP
2GATA46.74.4e-1596128133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            Cs+Cgt+++p+WRrg   ++ LCnaCG++yrk+
  93136  96 CSQCGTKESPQWRRGTCAKPVLCNACGVRYRKT 128
            ****************76666**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.0592169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-182390IPR003657WRKY domain
SuperFamilySSF1182905.36E-142689IPR003657WRKY domain
SMARTSM007741.2E-132690IPR003657WRKY domain
PfamPF031061.6E-162788IPR003657WRKY domain
SMARTSM004011.9E-790143IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-1195134IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-1195135No hitNo description
CDDcd002025.72E-1295148No hitNo description
PROSITE profilePS5011411.79396147IPR000679Zinc finger, GATA-type
PfamPF003202.4E-1296128IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATTTAWATA EDTARKDLDD AAKRCDDDAH RWRKYGHKKI GKRDKTSNDL SERSYYRCSF  60
EGCPARKRVG WCPETGHTRV WYEFEHTCGQ VMRGPCSQCG TKESPQWRRG TCAKPVLCNA  120
CGVRYRKTQA VRDETDEMNA QGPVKKRPMV TDPANNDVGE KRANVVTSNG QVARIKRGRS  180
KKSVPKELLS AAKRVVELSR APEGNSLFQH VLIPRAPRTS ATVATKPLIP APKPLTVPEG  240
VRNIRLFARV QTENGNKTVL KPVRVMVSSQ VEVEKLRTQL TIRDASLKAE RARAQALEAK  300
VNFLRAQLEC KALRARLRET AVSKAPEERP RSSPSMNEQA REKLEVDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005880.0CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419140.10.0predicted protein
TrEMBLA4S1F50.0A4S1F5_OSTLU; Uncharacterized protein
STRINGABO974330.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.39e-09GATA transcription factor 26