PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 9011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16374.5 Da PI: 9.2606 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 sgy+GV++++ ++++A++ + p + k+++lg +++ae+Aa a++ a + +g 9011 79 SGYRGVTQHS-PKKFEARVGVpP-----QsKHVYLGLYDSAEKAAVAYDTALVQARG 129 89*******9.9******99988.....44*******************99877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-5 | 79 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-16 | 79 | 138 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.01E-18 | 79 | 138 | No hit | No description |
SMART | SM00380 | 9.3E-21 | 80 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.066 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 81 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-17 | 81 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 119 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
RQVYLGGHLE EEFAAEAFDI IVLKLARIGD RSRTGTRPLK MNFPESRYAN LIGFIDSLTL 60 DELIMEVRRH SEGFARGNSG YRGVTQHSPK KFEARVGVPP QSKHVYLGLY DSAEKAAVAY 120 DTALVQARGR RASTNFPIYN YDEHI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000600 | 0.0 | CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422573.1 | 1e-104 | predicted protein, partial | ||||
TrEMBL | A4SB83 | 1e-102 | A4SB83_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABP00890 | 1e-103 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 4e-23 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 9011 |