PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 89717
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-PHD
Protein Properties Length: 384aa    MW: 42790.1 Da    PI: 4.6063
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
89717genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.4e-13326382256
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl.gLterqVkvWFqNrRakek 56 
               r R +f++eq  +Le+lF+  +r p+ ++ +e+A+ +   + + +++WF NrR k++
     89717 326 RARARFSSEQKATLERLFQTgTRVPKSSALAEIAADVgASSPSSIRIWFMNRRRKDR 382
               89*****************99****************4456899***********98 PP
2PHD39.11.7e-1387141150
            SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
    PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
            +C+ C    + ee++++lCdg C++++H++C+ +  ++e++p +   wlC+ C+ 
  89717  87 FCSKCAMadDREEDDILLCDGfCDRAYHQSCVVPAVKTEDIPPDdeGWLCPLCDA 141
            699999976777********88*******************99999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.21E-1477144IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-1385141IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.8785142IPR019787Zinc finger, PHD-finger
CDDcd155042.81E-2887139No hitNo description
SMARTSM002492.2E-987140IPR001965Zinc finger, PHD-type
PfamPF006286.7E-1187141IPR019787Zinc finger, PHD-finger
PROSITE patternPS01359088139IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.4E-12298382IPR009057Homeodomain-like
SuperFamilySSF466893.55E-11318382IPR009057Homeodomain-like
PROSITE profilePS5007114.673322383IPR001356Homeobox domain
SMARTSM003893.0E-4324383IPR001356Homeobox domain
PfamPF000463.5E-11326382IPR001356Homeobox domain
CDDcd000861.84E-9326382No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
VRSRIQSQFA MIRRHQSLLD AYAGDGWRGA ASQKPKPLGE LALAREKIFK GKVKIRELFK  60
GLEFDPNERE ITTVEDELGE TDAADIFCSK CAMADDREED DILLCDGFCD RAYHQSCVVP  120
AVKTEDIPPD DEGWLCPLCD ARVDVIYVLN DEYEQDLGQK CVAEDVFKAE AEMQEKGIVP  180
GTAQFAHAHE EAWPSDESED EDFDHGRASD DGRDDENEAL SGSARSSSEE SSSESESDLI  240
IEGPRRRTKV DYVKLNSDMF GDDEAYEGEA EELGWKRSNK TKAEMLAALQ NKNVGSNAAT  300
SSPKTGDKKR RKDNCNDNGT AEKRHRARAR FSSEQKATLE RLFQTGTRVP KSSALAEIAA  360
DVGASSPSSI RIWFMNRRRK DRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307311KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0006000.0CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422692.10.0predicted protein, partial
TrEMBLA4SB050.0A4SB05_OSTLU; Uncharacterized protein (Fragment)
STRINGABP010090.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP340233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-39Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain