PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 8911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YB | ||||||||
Protein Properties | Length: 132aa MW: 14848.7 Da PI: 4.7355 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 55.4 | 1.5e-17 | 3 | 96 | 4 | 94 |
NF-YB 4 qdrflPianvsrimk...kvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++ lP a + ++++ +++ an kis++++e+v ec ef+ v++ea++ + re + ti+++ +l al lGfe y ++ ++ + +e e 8911 3 DELQLPRATLHKMINdalRAIDANQKISNECREMVCECGDEFVNAVSAEANEASTREGKSTITAEHVLRALRALGFESYEAECEIARDEAKEEE 96 56679999999999833355689********************************************************888776655555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.4E-29 | 2 | 131 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.42E-28 | 3 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-11 | 6 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
SDDELQLPRA TLHKMINDAL RAIDANQKIS NECREMVCEC GDEFVNAVSA EANEASTREG 60 KSTITAEHVL RALRALGFES YEAECEIARD EAKEEENEKR EAKKKRKRID MSAEDAMALQ 120 NKLFAEARAK MA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-23 | 1 | 128 | 10 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000584 | 0.0 | CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417624.1 | 7e-90 | predicted protein, partial | ||||
TrEMBL | A4RWR3 | 2e-88 | A4RWR3_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95917 | 3e-89 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-20 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | 8911 |