PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 87137
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 525aa    MW: 57915 Da    PI: 9.5266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
87137genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-055068220
             EETTTTEEESSHHHHHHHH CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
             +C+ Cg+ F+  + L++Hi
    87137 50 RCQVCGRAFKAYDALEQHI 68
             7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0414972IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424977IPR007087Zinc finger, C2H2
PROSITE patternPS0002805172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-8289332No hitNo description
SMARTSM0035527303327IPR015880Zinc finger, C2H2-like
PfamPF128747.1E-5304327No hitNo description
PROSITE patternPS000280305327IPR007087Zinc finger, C2H2
SuperFamilySSF553153.73E-18364492IPR02906450S ribosomal protein L30e-like
Gene3DG3DSA:3.30.1330.301.7E-13398494IPR02906450S ribosomal protein L30e-like
PfamPF012488.6E-13398487IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MASESRRAAP TGKRQVSTTK ALAPKLPIIT AELLHRESRR SVMDKFGKVR CQVCGRAFKA  60
YDALEQHIGA SHYGLNNPEA KVLEAAQIAA GIIPTANTQV NRVSLNLGDL VSSKTKTSNS  120
MVNSLATYFK TDKPAKNARA EGKEQQMIRS TNMATSTGMV PKRGKARREG KKKKQSTLKK  180
IILRERTTRR EEESKKIVEE EVEVEIEVRV DWVYVLLTYD ETNHSVGVNF MCMDADSDDD  240
SDEDVSDESA AAEGENADEH SVQQKLDIIE ARAPAGVWGV RSLLDVLKGE PEPKSAKVKQ  300
ETRTCDVCDV KCFGEQAWNA HVGGKLHAKK LAIRDDPEAA EKAASQNKAA KTYVGEEGAL  360
NIRYAEQIIT DELNEATKTL LSTLKRFQDR LYHTDKIKAK MRRRLLFGLR EVAKSVDART  420
SKVVVIAPNI EKIESEGGLD DRVRQIIADA REKDVPVIFA LTKRRIGKAL GIQAVSIVSV  480
LDYNGADEEF KRALTLAADG RALYAKRGAV PKLDLSAREF IPSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417625.10.0predicted protein
TrEMBLA4RWR70.0A4RWR7_OSTLU; Uncharacterized protein
STRINGABO959180.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP76555