PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 8561
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HSF
Protein Properties Length: 166aa    MW: 18990.4 Da    PI: 10.2971
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
8561genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind872.5e-271885101
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   k++++++de+ +++i w+eng++f v++++ ++++ Lpk+FkhsnfaSFvRQLn YgF+k ++++          eF  + F++gk ell+++kr+ 
          8561   1 KTWNLVSDEHSNDTIAWNENGRTFTVWKPDVLESEYLPKTFKHSNFASFVRQLNNYGFRKCHSDR---------YEFGVEGFERGKPELLTTLKRHD 88 
                   89************************************************************999.........78******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-28187IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-27181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-25186IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-25186IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-73648IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-74961IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
KTWNLVSDEH SNDTIAWNEN GRTFTVWKPD VLESEYLPKT FKHSNFASFV RQLNNYGFRK  60
CHSDRYEFGV EGFERGKPEL LTTLKRHDAP RTKKTGAGAT GKKTGGGASA RGLASEVEQL  120
KRDRLLLLKE VMRLRETQSS QRDEVAALTN RLAVTESFQT QMRHFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B6e-191868104Heat shock factor protein 2
5d8l_B6e-191868104Heat shock factor protein 2
5d8l_D6e-191868104Heat shock factor protein 2
5d8l_F6e-191868104Heat shock factor protein 2
5d8l_H6e-191868104Heat shock factor protein 2
5hdk_A8e-1918613109Heat shock factor protein 2
5hdk_B8e-1918613109Heat shock factor protein 2
5hdk_C8e-1918613109Heat shock factor protein 2
5hdk_D8e-1918613109Heat shock factor protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005990.0CP000599.1 Ostreococcus lucimarinus CCE9901 chromosome 19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422409.11e-121predicted protein, partial
TrEMBLA4SAB81e-120A4SAB8_OSTLU; Uncharacterized protein (Fragment)
STRINGABP007261e-121(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-36heat shock transcription factor A1D