PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 8400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | Whirly | ||||||||
Protein Properties | Length: 152aa MW: 16079.3 Da PI: 10.0775 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 218.6 | 5.8e-68 | 5 | 143 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkalkvePlpdG 102 +vyktk+alk+kavr+tfe+++sg++++kraGg+llelanata+r+ydW++k+sf+lsate+ael+d +as+++c+ffhdp+a+g+n+G+v+ka+kveP+pdG 8400 5 GVYKTKGALKLKAVRATFESDASGRRIMKRAGGVLLELANATAPRQYDWGNKGSFMLSATEAAELADrMASNAPCSFFHDPGAGGANRGNVNKAFKVEPMPDG 107 79***************************************************************************************************** PP Whirly 103 s.Glfvnlsvtnslvkgnesf.svPvskaefavlrsllv 139 s Glfvnl++t++ gn+sf svPvs++e+a+lr++lv 8400 108 SgGLFVNLQTTSG---GNKSFvSVPVSYGESAALRHILV 143 *9**********9...9999989*************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54447 | 1.88E-20 | 1 | 152 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 2.0E-47 | 1 | 152 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.1E-48 | 6 | 141 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
FVDYGVYKTK GALKLKAVRA TFESDASGRR IMKRAGGVLL ELANATAPRQ YDWGNKGSFM 60 LSATEAAELA DRMASNAPCS FFHDPGAGGA NRGNVNKAFK VEPMPDGSGG LFVNLQTTSG 120 GNKSFVSVPV SYGESAALRH ILVYLVPKIA GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 3e-26 | 1 | 152 | 39 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 3e-26 | 1 | 152 | 39 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 3e-26 | 1 | 152 | 39 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 3e-26 | 1 | 152 | 39 | 190 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000596 | 0.0 | CP000596.1 Ostreococcus lucimarinus CCE9901 chromosome 16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001421958.1 | 1e-108 | predicted protein, partial | ||||
TrEMBL | A4S8W4 | 1e-107 | A4S8W4_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABP00252 | 1e-108 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 2e-26 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | 8400 |