PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 5960
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 275aa    MW: 29506.2 Da    PI: 10.9432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
5960genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-152973147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W+ eE+ l+v+  k++G   W++I +++g ++t+ q++s+ qk+
             5960 29 REKWSDEEHALFVESLKKYGRA-WRKIEEHIG-TKTAVQIRSHAQKF 73
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-152379IPR009057Homeodomain-like
PROSITE profilePS5129421.3472478IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-92577IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-152776IPR006447Myb domain, plants
SMARTSM007171.4E-122876IPR001005SANT/Myb domain
PfamPF002492.3E-122972IPR001005SANT/Myb domain
CDDcd001676.82E-103174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
TTTTTTTTTT TTEGAPVKVR KPYTITKKRE KWSDEEHALF VESLKKYGRA WRKIEEHIGT  60
KTAVQIRSHA QKFFSKLQKE QAARGSASGS DAPAGSQGDS SKRRGARGST SGSKKSRRSV  120
SPDLNLKIPP ARPKKKPDHP YPKKATSQQP SGGSGEGKST GTAQNMMGSA TQAEHIANAS  180
SSAAVAAVLS VASDKMQTSL QHDLRAGYFG VPPGAGMFAQ PGLFPVQHMM NPYVGMSNPA  240
AGAQNPPQMS NPQQFINYIN FLTNMWRQNA NAMSA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005860.0CP000586.1 Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418464.10.0predicted protein, partial
TrEMBLA4RYW30.0A4RYW3_OSTLU; Uncharacterized protein (Fragment)
STRINGABO967570.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-31MYB_related family protein