PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 5313
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family TALE
Protein Properties Length: 244aa    MW: 28327.7 Da    PI: 6.6353
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
5313genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.5e-08191242654
               S--HHHHHHHHHHHHHS...SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFekn...rypsaeereeLAkklgLterqVkvWFqNrRak 54 
               ++ ++ +e+L++   +n   +yp++++++eL ++++L+ +qV +WF N R +
      5313 191 KLPDQSTEVLKNWWSENivwPYPTEDDKRELIAQTKLDATQVNNWFINFRKR 242
               555667777777777643339***************************9977 PP

2ELK30.77.2e-11163184122
   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
           +L+++L+rKY++++++Lk+EF+
  5313 163 RLREALKRKYASSIMTLKSEFM 184
           69*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-14647IPR005540KNOX1
PfamPF037902.3E-71442IPR005540KNOX1
SMARTSM011881.0E-4163184IPR005539ELK domain
PfamPF037891.0E-7163184IPR005539ELK domain
PROSITE profilePS5007112.163183244IPR001356Homeobox domain
SMARTSM003897.1E-4185244IPR001356Homeobox domain
SuperFamilySSF466895.13E-16185244IPR009057Homeodomain-like
CDDcd000864.03E-10186244No hitNo description
Gene3DG3DSA:1.10.10.604.5E-24188244IPR009057Homeodomain-like
PfamPF059201.2E-15203242IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
SATDSEEMTL AVRAHPMYPR LVEAYYECRQ IGAEGDVLEA LDRERDAMLY SVQVMNEDAS  60
SSGGAHDVPQ RDLDRFMREC THELESYVKE LHALYEDAKS CCRELETRAR KVRSDVVKSA  120
DIRGEAAESK RRAPATAAEH AAASGDFDQI LSNSQQRRDH EERLREALKR KYASSIMTLK  180
SEFMRKRKKG KLPDQSTEVL KNWWSENIVW PYPTEDDKRE LIAQTKLDAT QVNNWFINFR  240
KRHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-15186242864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168188KRKYASSIMTLKSEFMRKRKK
2184188RKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417587.10.0predicted protein, partial
TrEMBLA4RWJ20.0A4RWJ2_OSTLU; Uncharacterized protein (Fragment)
STRINGABO958800.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.13e-34KNOTTED-like homeobox of Arabidopsis thaliana 7