PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 5313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | TALE | ||||||||
Protein Properties | Length: 244aa MW: 28327.7 Da PI: 6.6353 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.3 | 5.5e-08 | 191 | 242 | 6 | 54 |
S--HHHHHHHHHHHHHS...SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFekn...rypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ ++ +e+L++ +n +yp++++++eL ++++L+ +qV +WF N R + 5313 191 KLPDQSTEVLKNWWSENivwPYPTEDDKRELIAQTKLDATQVNNWFINFRKR 242 555667777777777643339***************************9977 PP | |||||||
2 | ELK | 30.7 | 7.2e-11 | 163 | 184 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +L+++L+rKY++++++Lk+EF+ 5313 163 RLREALKRKYASSIMTLKSEFM 184 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-14 | 6 | 47 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.3E-7 | 14 | 42 | IPR005540 | KNOX1 |
SMART | SM01188 | 1.0E-4 | 163 | 184 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.0E-7 | 163 | 184 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.163 | 183 | 244 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-4 | 185 | 244 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 185 | 244 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.03E-10 | 186 | 244 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 188 | 244 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-15 | 203 | 242 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
SATDSEEMTL AVRAHPMYPR LVEAYYECRQ IGAEGDVLEA LDRERDAMLY SVQVMNEDAS 60 SSGGAHDVPQ RDLDRFMREC THELESYVKE LHALYEDAKS CCRELETRAR KVRSDVVKSA 120 DIRGEAAESK RRAPATAAEH AAASGDFDQI LSNSQQRRDH EERLREALKR KYASSIMTLK 180 SEFMRKRKKG KLPDQSTEVL KNWWSENIVW PYPTEDDKRE LIAQTKLDAT QVNNWFINFR 240 KRHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 4e-15 | 186 | 242 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 188 | KRKYASSIMTLKSEFMRKRKK |
2 | 184 | 188 | RKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000584 | 0.0 | CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417587.1 | 0.0 | predicted protein, partial | ||||
TrEMBL | A4RWJ2 | 0.0 | A4RWJ2_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95880 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5451 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 3e-34 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | 5313 |