PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 41981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 99aa MW: 11342.8 Da PI: 9.2765 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 2 | 42 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT +Ede+l+ +++++G ++W++ a+ m ++t+kqc+ rw 41981 2 WTSDEDEKLLALIEKHGARRWNSLASAME-TKTAKQCRRRWS 42 *****************************.***********6 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 53 | 93 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ Ed+ l+da+++lG++ W++Ia+ +g gRt++ k+r+ 41981 53 EWTEAEDLALLDAHEKLGNK-WTAIAKLVG-GRTDNGAKNRFK 93 6*******************.*********.*****8888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.86E-27 | 1 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.41 | 1 | 49 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-10 | 2 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 2 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-12 | 2 | 41 | No hit | No description |
SMART | SM00717 | 2.2E-10 | 50 | 98 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.732 | 50 | 99 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.7E-13 | 53 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.62E-8 | 53 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-17 | 54 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 99 aa Download sequence Send to blast |
MWTSDEDEKL LALIEKHGAR RWNSLASAME TKTAKQCRRR WSGHLTTEIK EHEWTEAEDL 60 ALLDAHEKLG NKWTAIAKLV GGRTDNGAKN RFKALVDKQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-29 | 2 | 99 | 7 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-29 | 2 | 99 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-29 | 2 | 99 | 7 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000597 | 1e-165 | CP000597.1 Ostreococcus lucimarinus CCE9901 chromosome 17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422172.1 | 1e-65 | predicted protein, partial | ||||
TrEMBL | A4SA32 | 2e-64 | A4SA32_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABP00489 | 4e-65 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11050.1 | 5e-28 | myb domain protein 64 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 41981 |