PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 40769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 102aa MW: 12091.1 Da PI: 10.6478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 3 | 48 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + WT Ed+ l++++ ++G ++W+ Ia+ m +R +kqc++r++++l 40769 3 QQWTVREDKELLQLIDKYGAKRWSYIASLMR-HRRGKQCRDRYLNHL 48 78*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 55 | 96 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g W++eE+++lv+++k lG++ W++ a+ + gR ++ +k++w+ 40769 55 GEWSKEEELILVEGHKVLGTK-WAALAKLLT-GRPENAIKNHWH 96 89*******************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.6E-12 | 1 | 50 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.944 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-28 | 3 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 4 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-11 | 5 | 48 | No hit | No description |
Pfam | PF13921 | 1.8E-17 | 5 | 62 | No hit | No description |
SMART | SM00717 | 2.7E-11 | 53 | 101 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.037 | 53 | 102 | IPR017930 | Myb domain |
CDD | cd00167 | 1.42E-7 | 56 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 56 | 101 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MTQQWTVRED KELLQLIDKY GAKRWSYIAS LMRHRRGKQC RDRYLNHLRP GIKTGEWSKE 60 EELILVEGHK VLGTKWAALA KLLTGRPENA IKNHWHATLR CK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-34 | 5 | 102 | 10 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000595 | 1e-171 | CP000595.1 Ostreococcus lucimarinus CCE9901 chromosome 15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001421720.1 | 4e-70 | predicted protein, partial | ||||
Swissprot | Q9S7L2 | 3e-35 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A4S888 | 8e-69 | A4S888_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABP00014 | 1e-69 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-37 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | 40769 |
Publications ? help Back to Top | |||
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