PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 38105
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 330aa    MW: 36460.4 Da    PI: 9.655
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
38105genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.61.4e-2573152171
  E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
              r++k+Lr+++++   ++ek+ee +++++neva+eLv+e            d+kn rRR+YD+lNVL+al++i k +k+ei w+g
    38105  73 REQKGLRHFSMR---VCEKVEEkKHTSYNEVANELVEElrvtaeetnadfDEKNVRRRVYDALNVLMALEIIRK-KKKEIFWNG 152
              689*********...******99***************************************************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.6E-885329IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.7E-3871155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2973152IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.3E-2375152IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.93E-2075153IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.33E-34175273IPR014889Transcription factor DP, C-terminal
SMARTSM011382.7E-55176329IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-28178274No hitNo description
PfamPF087813.0E-27185299IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTPTIGKYDA EVAEKKCQEA AEFVAQARRI IATARANLRA GVKAEVGDDE AYATPKSSKI  60
RKSLPQTPGT GEREQKGLRH FSMRVCEKVE EKKHTSYNEV ANELVEELRV TAEETNADFD  120
EKNVRRRVYD ALNVLMALEI IRKKKKEIFW NGYPEGYVKP GESPPPAKAA GPRTSNRELA  180
STESIDAFEQ KTNYLAELVE QHDALVALVE RNQKALAGDG PPPTGIQLPF ILIQTKSEAE  240
IDVEISDDQR TVHFDFNRTP FQIHDGFHVL TKMINLHKKR VVGDDGGAEA KASTSKTPTT  300
QKATPVKRKT PTPSKGVGKS PLSAKKAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3071154590PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124145RRRVYDALNVLMALEIIRKKKK
2141146RKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005900.0CP000590.1 Ostreococcus lucimarinus CCE9901 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420110.10.0predicted protein
TrEMBLA4S3K40.0A4S3K4_OSTLU; Uncharacterized protein
STRINGABO984030.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-54Transcription factor DP