PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 37312
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 423aa    MW: 45325.6 Da    PI: 4.43
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
37312genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.2e-072870639
  zf-B_box  6 CpeHe...ekelqlfCedCqqllCedClleeHkg......Htv 39
              C+ ++   +  ++++C +++ +lC+ C    H        H++
     37312 28 CESCPegaRRAASWYCAQDEAYLCDACDARVHAAnaiaskHER 70
              77777444566*****************999955667777765 PP
2CCT67.83e-23310353144
    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
            R ++l+R+keKrk+R+F+K irY+sRKa+A++RpRvKG+Fvk +
  37312 310 RLERLKRWKEKRKNRNFNKVIRYQSRKACADNRPRVKGKFVKVS 353
            889**************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.9022373IPR000315B-box-type zinc finger
SMARTSM003362.6E-42373IPR000315B-box-type zinc finger
CDDcd000213.46E-62873No hitNo description
PfamPF006431.8E-53071IPR000315B-box-type zinc finger
PROSITE profilePS5101714.862310352IPR010402CCT domain
PfamPF062032.4E-18310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAPSDARASA SDRARAEDAT RDATGAACES CPEGARRAAS WYCAQDEAYL CDACDARVHA  60
ANAIASKHER TALGTNGRGV GAHGAEDADS RRMSDAYGDG DDVEVTTDDV IGICDEYLSN  120
PMMPSSSFPV ETLDGAFWDE NLGELDADGI DPESFLRDPL DDEDAAKDGV VNREIDGERS  180
GSKYSDSVGM SKSEIEALRR VGEYASSSGF LGPILDDSAV RFLELNPSYG AFGSPSPESS  240
DMGFESLAGK LSAVAVKREP ESDLDNQTVA SSGAGDANGH SAMADALRSI PEGPPSGSDT  300
YAGLPQPQTR LERLKRWKEK RKNRNFNKVI RYQSRKACAD NRPRVKGKFV KVSSVPDLSK  360
IREAAGQSDD DDAREAEEER DKIAELGLDK GLRAPPSMRK MKKGLVSSAS MPDFSMYNTM  420
DD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417557.10.0predicted protein
TrEMBLA4RWC50.0A4RWC5_OSTLU; Uncharacterized protein
STRINGABO958500.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-12B-box type zinc finger protein with CCT domain