PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 34929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YC | ||||||||
Protein Properties | Length: 98aa MW: 10413.3 Da PI: 10.1505 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.1 | 2.6e-15 | 7 | 88 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivprd 99 ++l arik+++++dedv +i+ aP+++ ka elf+ +l + a +t++ s ++ av+ + fdfl div + 34929 7 TNLLAARIKRVMQKDEDVGKIAGPAPIVMGKALELFVKQLVTTANDVAVLHGSKTVNGSHLKGAVAMVpEAFDFLSDIVEKA 88 567789**********************************************************9875389*******9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 7.3E-16 | 11 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-22 | 12 | 87 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.95E-17 | 18 | 87 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MPPKGKTNLL AARIKRVMQK DEDVGKIAGP APIVMGKALE LFVKQLVTTA NDVAVLHGSK 60 TVNGSHLKGA VAMVPEAFDF LSDIVEKAKD LGPPPDLR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000589 | 1e-163 | CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001419487.1 | 2e-64 | predicted protein, partial | ||||
Swissprot | Q10315 | 6e-21 | BUR6_SCHPO; Transcription regulator complex subunit bur6 | ||||
TrEMBL | A4S283 | 4e-63 | A4S283_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO97780 | 6e-64 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 3e-22 | NF-YC family protein |
Link Out ? help Back to Top | |
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Phytozome | 34929 |