PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 34929
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YC
Protein Properties Length: 98aa    MW: 10413.3 Da    PI: 10.1505
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
34929genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.12.6e-157881999
  NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivprd 99
           ++l  arik+++++dedv +i+  aP+++ ka elf+ +l   +   a     +t++ s ++ av+   + fdfl div + 
  34929  7 TNLLAARIKRVMQKDEDVGKIAGPAPIVMGKALELFVKQLVTTANDVAVLHGSKTVNGSHLKGAVAMVpEAFDFLSDIVEKA 88
           567789**********************************************************9875389*******9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008087.3E-161171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-221287IPR009072Histone-fold
SuperFamilySSF471137.95E-171887IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MPPKGKTNLL AARIKRVMQK DEDVGKIAGP APIVMGKALE LFVKQLVTTA NDVAVLHGSK  60
TVNGSHLKGA VAMVPEAFDF LSDIVEKAKD LGPPPDLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005891e-163CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419487.12e-64predicted protein, partial
SwissprotQ103156e-21BUR6_SCHPO; Transcription regulator complex subunit bur6
TrEMBLA4S2834e-63A4S283_OSTLU; Uncharacterized protein (Fragment)
STRINGABO977806e-64(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-22NF-YC family protein