PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 33434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 441aa    MW: 48294.2 Da    PI: 5.9391
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
33434genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.1e-07245441
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
              + C+ +    + +fC  ++ +lC++C    H g       H++++
     33434  2 PACAACRARDADIFCLADEAFLCATCDARVH-GanavaarHERIT 45
              68******99******************999.5577888888765 PP

2CCT49.91.1e-17271316144
    CCT   1 ReaallRYkeKrktRk..FeKkirYesRKavAesRpRvKGrFvkqa 44 
            R+a+l RY+ Kr++R+   +K +rYe+RK++A+ R RvKGrFvk++
  33434 271 RQAQLDRYRAKRERRLmgLKKVVRYECRKTLADARVRVKGRFVKAN 316
            99*************85579***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.537146IPR000315B-box-type zinc finger
SMARTSM003361.9E-7146IPR000315B-box-type zinc finger
PfamPF006432.9E-5245IPR000315B-box-type zinc finger
CDDcd000210.004341543No hitNo description
PfamPF062037.8E-16271315IPR010402CCT domain
PROSITE profilePS5101710.844271315IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MPACAACRAR DADIFCLADE AFLCATCDAR VHGANAVAAR HERITVDEWY KRTLEAGLSE  60
AKECGDWKAA ASATASARRE DEDGRGRGTS ESLREKSFSL FKRDDAKTTT HDSTSSMDAT  120
ISAWDVGVFL NLGENGEEDT SPRAPRMSSN SDTMIFDLDD DPLASLLEMP ETESALLFDG  180
DAASISAALE AVADQIQAVS PNQAAAKAYV SKSARDNFTP RPSPLGLGLP AAQRGPAETV  240
GSYPPGAFPP IMMPMSSDLF GIPRRVVSKE RQAQLDRYRA KRERRLMGLK KVVRYECRKT  300
LADARVRVKG RFVKANPDEK TSALKSFQSC PDLSALVEDE DNAKPLSFAP MKHTTLDDQQ  360
LHQQNSKRRI SDDRLSNSDA SHDDKLDVQS MRYEILRDSG APALHPPTIP ETLPLPSGLR  420
RTKQMRHCQS EINLMDLAGY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005890.0CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419738.10.0predicted protein
TrEMBLA4S2F20.0A4S2F2_OSTLU; Uncharacterized protein
STRINGABO980310.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP741055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.18e-10CONSTANS-like 2