PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 32755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YB | ||||||||
Protein Properties | Length: 137aa MW: 15065.6 Da PI: 4.5531 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 43.7 | 6.9e-14 | 2 | 105 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPa....nak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d+ lP a + r++k+ l + +ak i k+a ec+ fi ++t+ a+d c+ kr ti+ d+l a+ + f + v+ +++ l +r++++ k 32755 2 DEDLPRAHIKRLVKHKLSTldnvDAKgqsfepnIQKEALTAYGECAKIFIHYLTATANDVCRDHKRSTISDADVLAAIEECDFGELVDDVRATLDAFRDAKRTK 105 566888888888888775322222222233333999999999*********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.6E-29 | 2 | 125 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-21 | 3 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-8 | 33 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDEDLPRAHI KRLVKHKLST LDNVDAKGQS FEPNIQKEAL TAYGECAKIF IHYLTATAND 60 VCRDHKRSTI SDADVLAAIE ECDFGELVDD VRATLDAFRD AKRTKKARDA EAKETRDEGD 120 DDEVEKRDDG GGDGAA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000587 | 0.0 | CP000587.1 Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418976.1 | 1e-93 | predicted protein | ||||
TrEMBL | A4S0I1 | 2e-92 | A4S0I1_OSTLU; Uncharacterized protein | ||||
STRING | ABO97269 | 4e-93 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 4e-23 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | 32755 |