PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 32661
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 596aa    MW: 68122.4 Da    PI: 5.1815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
32661genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10269317247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      g+WT eE++++ d ++ l+gg     W t ++ ++ gR ++qc ++++++
            32661 269 GKWTDEEHQKFMDIIASLPGGkanyEWGTFSKGIP-GRVGYQCSNYYRTL 317
                      89*********************************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.677263318IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-8268326IPR009057Homeodomain-like
SuperFamilySSF466894.93E-8268325IPR009057Homeodomain-like
PfamPF002494.3E-7269317IPR001005SANT/Myb domain
CDDcd001670.00533270318No hitNo description
SuperFamilySSF578502.56E-7424487No hitNo description
Gene3DG3DSA:3.30.40.103.3E-6434489IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSENDMAVAN APVDASCAKS AIEGASGDAR AAAAVPAWMA DDDDDGLTEE QRRVIAERVA  60
ALQNRFKKFE EKTTREKVEE LMLGNADKGL TEREADMVLR VCNGNEFEAS DRLGEAEDGE  120
SFLMSIRFMI QEEDALKRRS QSSKAAQTAN ERFNKRIERL RKRRMSFGGD EEDEEDAGEP  180
EEFFETEYIL EESLGVQFVR HTKKHVNVKR LRLDDAIARA QVAEELAEPE VNPYEGWSEA  240
RIKAWKNREK NENQYYYRFN EPGEMQANGK WTDEEHQKFM DIIASLPGGK ANYEWGTFSK  300
GIPGRVGYQC SNYYRTLVKN NIIQDENYMV DPVSGDLRFN FKNKGFTRAE PVEGEPRMVM  360
VKKVIKQKKP KAPKQPKKAK KKVKKSDDKA FHCTIRAGPV RSSGRATKKT YTDGGDDDED  420
FDDEFEELPV LPGFIDPITR MAIEEPAISP YGHVAGYETW CKILRQPEAP DTCPFTKQPL  480
KRRELIKLTH ENIDQYRSKI VENQQTGENA QVRHLGRGNR VRTPTHPTKG DYLSIKTEEV  540
IFGILFAFMA WKLWQSVRGL FRYWKYVRAP NAPETELEAG AIAFEEDDDE NEKID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366384QKKPKAPKQPKKAKKKVKK
2376384KKAKKKVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005870.0CP000587.1 Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418705.10.0predicted protein
TrEMBLA4S0950.0A4S095_OSTLU; Uncharacterized protein
STRINGABO969980.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP703433