PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 31702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | Nin-like | ||||||||
Protein Properties | Length: 362aa MW: 39786.1 Da PI: 9.1659 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.6 | 3e-24 | 43 | 93 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k i l d+s+ F+lpi++AAkeL+vc+TvLK +CR +GI+RWP+Rk+++l 31702 43 TKIIALIDVSSRFALPIAQAAKELDVCVTVLKSTCRAFGIMRWPYRKMRKL 93 578999*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.233 | 33 | 113 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.3E-19 | 48 | 93 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSAVETTTNT GLPIRMPNDA RGATHAIDPL SDVHTAVKSA TGTKIIALID VSSRFALPIA 60 QAAKELDVCV TVLKSTCRAF GIMRWPYRKM RKLNTMIKQL ERSARNAAEE NILHHRMKRL 120 EACRRARDLL VLEAEANARA RIGKPASQQS AKAEIASTGA RYDSSGRLGN FKDPGYAFDT 180 DHKGYALHEA MRKMMETEGL DTIGRSGHVD VESDPLSELA SQVTAVQERF VRRPNRNKRQ 240 LPTRCPEEMA LHEFVMGNPG LEAMASLTAR LRRQKESKKQ TSEHADDADG EVDIDGDDGK 300 QIAWIVSSQS PAYTVNVRPS NPTARIPDVL VEERSRREAT SPLEPSLALF PLNVSAIHSA 360 A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 0.0 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417754.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RXH9 | 0.0 | A4RXH9_OSTLU; Uncharacterized protein | ||||
STRING | ABO96047 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-14 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 31702 |