PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 31513
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 757aa    MW: 84216.4 Da    PI: 7.0226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
31513genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W +Ia+ ++ ++++kqck rw+ +l
            31513  8 GVWKNTEDEILKAAVMKYGKNQWPRIASLLN-RKSAKQCKARWFEWL 53
                     78*****************************.***********9986 PP

2Myb_DNA-binding33.68.9e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
            31513  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPVVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.183253IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-19456IPR009057Homeodomain-like
SMARTSM007176.6E-14655IPR001005SANT/Myb domain
CDDcd001672.83E-111053No hitNo description
PfamPF139212.1E-131070No hitNo description
SuperFamilySSF466891.15E-2133106IPR009057Homeodomain-like
PROSITE profilePS5129420.89354107IPR017930Myb domain
CDDcd116592.25E-3055106No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1457104IPR009057Homeodomain-like
SMARTSM007178.0E-1358105IPR001005SANT/Myb domain
PfamPF118312.3E-36409608IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MRIQIKGGVW KNTEDEILKA AVMKYGKNQW PRIASLLNRK SAKQCKARWF EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPVVGR TPSQCLERYE KLLDAACAKD DDYDAGDDPR  120
RLRPGEIDPN PETKPAKPDA VDMDEDEKEM LAEARARLAN TKGKKAKRKA REKQLEEARR  180
LAELQKKREL KAAGIAHVRR AKRVRGVDYN AEIAFERKPD AVMYDTREED EAFAKQQSAK  240
VFKPISLAEL EGKKSAKQLD EESKKREAAK QKMQERRDMP GAVQQALKVN DASFFRRSKL  300
MLPTPQVSDR ELEDIAKIGK GGVGLLDDGS ATPASGLLGS YGQTPATSSG LAGRTPMRTP  360
QVGGDAILIE AQQQAARRQQ QSTLFGGAEE AAAVMPTDFA GATPSHAKAA PTPSRSDVSS  420
HMGATPSLHG QTPIRDGLNI NDQYASHFGD LSARERRAHT ASTAASLKSA FMSLPKPQNE  480
YQIDLPDEPM EDEPMEDAVV EDEADVRARE AAALAEYEAI QRRKRSQAVQ RDLPRPTELT  540
PVAPLAEDSI SKLVNEEAHA LLENDIAKYG KKSKSAPALE DFDESLLVAA RRLVDTEADE  600
MLREQNVSRE DFAEAFSAAL VAERKKLIFV PSLNAQISVD EASKEQQLEA AKATFELVRG  660
EMEKDAKRAA KLEQKCILLT AGLQKRNGEL CNKLKKTVEE VKALSTEAAS YAVLHVQEER  720
AAPNRIEYWL ELVEAARTRE KLLQEKFETL TRQLNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-17327503791Cell division cycle 5-like protein
5xjc_L1e-17327503791Cell division cycle 5-like protein
5yzg_L1e-17327503791Cell division cycle 5-like protein
5z56_L1e-17327503791Cell division cycle 5-like protein
5z57_L1e-17327503791Cell division cycle 5-like protein
5z58_L1e-17327503791Cell division cycle 5-like protein
6ff4_L1e-17327503791Cell division cycle 5-like protein
6ff7_L1e-17327503791Cell division cycle 5-like protein
6icz_L1e-17327503791Cell division cycle 5-like protein
6id0_L1e-17327503791Cell division cycle 5-like protein
6id1_L1e-17327503791Cell division cycle 5-like protein
6qdv_O1e-17327503791Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005850.0CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417909.10.0predicted protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA4RWZ80.0A4RWZ8_OSTLU; Uncharacterized protein
STRINGABO962020.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-172cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]