PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 31513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 757aa MW: 84216.4 Da PI: 7.0226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W +Ia+ ++ ++++kqck rw+ +l 31513 8 GVWKNTEDEILKAAVMKYGKNQWPRIASLLN-RKSAKQCKARWFEWL 53 78*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 33.6 | 8.9e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l 31513 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPVVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.183 | 2 | 53 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-14 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-11 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 2.1E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 1.15E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.893 | 54 | 107 | IPR017930 | Myb domain |
CDD | cd11659 | 2.25E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-13 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.3E-36 | 409 | 608 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 757 aa Download sequence Send to blast |
MRIQIKGGVW KNTEDEILKA AVMKYGKNQW PRIASLLNRK SAKQCKARWF EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPVVGR TPSQCLERYE KLLDAACAKD DDYDAGDDPR 120 RLRPGEIDPN PETKPAKPDA VDMDEDEKEM LAEARARLAN TKGKKAKRKA REKQLEEARR 180 LAELQKKREL KAAGIAHVRR AKRVRGVDYN AEIAFERKPD AVMYDTREED EAFAKQQSAK 240 VFKPISLAEL EGKKSAKQLD EESKKREAAK QKMQERRDMP GAVQQALKVN DASFFRRSKL 300 MLPTPQVSDR ELEDIAKIGK GGVGLLDDGS ATPASGLLGS YGQTPATSSG LAGRTPMRTP 360 QVGGDAILIE AQQQAARRQQ QSTLFGGAEE AAAVMPTDFA GATPSHAKAA PTPSRSDVSS 420 HMGATPSLHG QTPIRDGLNI NDQYASHFGD LSARERRAHT ASTAASLKSA FMSLPKPQNE 480 YQIDLPDEPM EDEPMEDAVV EDEADVRARE AAALAEYEAI QRRKRSQAVQ RDLPRPTELT 540 PVAPLAEDSI SKLVNEEAHA LLENDIAKYG KKSKSAPALE DFDESLLVAA RRLVDTEADE 600 MLREQNVSRE DFAEAFSAAL VAERKKLIFV PSLNAQISVD EASKEQQLEA AKATFELVRG 660 EMEKDAKRAA KLEQKCILLT AGLQKRNGEL CNKLKKTVEE VKALSTEAAS YAVLHVQEER 720 AAPNRIEYWL ELVEAARTRE KLLQEKFETL TRQLNA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
5xjc_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
5yzg_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
5z56_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
5z57_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
5z58_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6ff4_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6ff7_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6icz_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6id0_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6id1_L | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
6qdv_O | 1e-173 | 2 | 750 | 3 | 791 | Cell division cycle 5-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 0.0 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417909.1 | 0.0 | predicted protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A4RWZ8 | 0.0 | A4RWZ8_OSTLU; Uncharacterized protein | ||||
STRING | ABO96202 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1040 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 1e-172 | cell division cycle 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 31513 |
Publications ? help Back to Top | |||
---|---|---|---|
|