PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 40918.8 Da PI: 10.2074 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.9 | 7.8e-12 | 16 | 76 | 2 | 62 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e +r r+ +NRe+A+ R+RK++++ Le+++ +Le++N aL+ + +l++e +l+++ 30605 16 TEAERLERLRRNRESAKNMRARKREYVRDLEKRASALEKQNGALQGMVMHLTNENHALRMN 76 6789999***********************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-13 | 13 | 78 | No hit | No description |
SMART | SM00338 | 1.9E-8 | 15 | 79 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.875 | 17 | 80 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-9 | 17 | 77 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.63E-9 | 20 | 75 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 23 | 37 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14704 | 7.49E-10 | 27 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSARSAGKVD GNATETEAER LERLRRNRES AKNMRARKRE YVRDLEKRAS ALEKQNGALQ 60 GMVMHLTNEN HALRMNLQAA TGVALPTVMV PAPYPTMTPK LPLPPLDAPI IETPPSPQLD 120 LKKPAPKRRK KTVAASVTAL ALGALSVVGL AAPRSNSAGT QFSSSSRRLL AITAAPEDPL 180 TKIGVNVTSL REEIMRNDDE RTFSLPDRAV AEGIALWGDK TSDGRIVNVL KSTNVNDPWF 240 SAFKAAGMPQ HVNLLSRVSC TEVFKFKGSD EANAEPGAVA TTSAWTNEQR EKMERKKYSG 300 AIPLPSGREN VTKVSEQTSL EAEDSLVSVL LPPPVEGVMQ QLSKLFVVTF NKRTADYTTH 360 SCLMPQPMTQ AHHHV* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416951.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RUF8 | 0.0 | A4RUF8_OSTLU; Uncharacterized protein | ||||
STRING | ABO95244 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5392 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40950.1 | 6e-07 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 30605 |