PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 22300.8 Da PI: 6.7388 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.6 | 2.6e-16 | 126 | 159 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ ++p+WRrgp +++LCnaCG +yr+++ 30438 126 CDHCGALDSPQWRRGPASKPMLCNACGTRYRRTN 159 9***************99999**********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-7 | 120 | 174 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.295 | 120 | 175 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-11 | 121 | 165 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.81E-11 | 122 | 163 | No hit | No description |
CDD | cd00202 | 5.46E-11 | 125 | 164 | No hit | No description |
Pfam | PF00320 | 8.5E-14 | 126 | 158 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLGEETPSAR ELVPDRRWYT LVKIHDDGCT VAVSDAELAM LEASILKENV GGGANAWTRP 60 SSMRPCSSEE DGSGGRWAPD DAEEYEECGA SGRGGDSMSA WEDSEVSRLP SAAPGVAGHT 120 KPGGPCDHCG ALDSPQWRRG PASKPMLCNA CGTRYRRTNN LGPSPSSRMA TPEKRKATAV 180 QQNDTPRGKK NARCGAIGEK FSRANAMVY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416579.1 | 1e-152 | predicted protein | ||||
TrEMBL | A4RTZ2 | 1e-151 | A4RTZ2_OSTLU; Uncharacterized protein | ||||
STRING | ABO94872 | 1e-152 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 4e-11 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | 30438 |