PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30413

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 506aa MW: 53399.6 Da PI: 9.416

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30413	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.8e-10	410	459	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W eE e lv++v+q Ggg W+ I +++g ++Rt+ ++k++w+++l 30413 410 NPWALEEAEALVRGVAQCGGGKWADI-KKLGftaiEHRTAVDLKDKWRNLL 459 68*********************9.567779999***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.975	404	463	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-13	406	460	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-6	408	461	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-6	410	459	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-15	410	467	IPR009057	Homeodomain-like
CDD	cd11660	1.99E-20	411	460	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MATMAPSQTP GCHATRAALR RDGAPGAVRG YRFVNRPDVN GDTDAVDQQM AGFVSEAGPF 60 DADPVLKAAE REILSATKAQ RRAAAERGAL LEHGYGAMLG TGSGSMGNLG MLTASGGSDD 120 DDKASTQSVA YLSGDAASNR SYSPFDVTLD EAAENLLCEF GAPIMDGAIG LIDDEGAEIF 180 VEHNAPPLSS WMSNGNLCGL VAPNDHEPEW ASGGGAHGAY AHVPAVIDFG VPGHTEVESI 240 ASLRGQYRAL FGKDTNSNNR QWILKRLEAF RNGDDFTPPS SRFSSPLSGE DTLMNVGASR 300 FKPQASPKRA AGKRQVKSAR SLYDDDAMDE HESPRRGVAA KGRGGKGAKG KRSAEATLPK 360 SAHKKAKSVS DAESNDGDIG KKGSGRAAGK PAGRGKPGEN GTGRRSKHHN PWALEEAEAL 420 VRGVAQCGGG KWADIKKLGF TAIEHRTAVD LKDKWRNLLR IAMLPQQSVK TVGDKKREIP 480 QELLAKVREL AAKQAKAKAA AESRR*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MATMAPSQTP GCHATRAALR RDGAPGAVRG YRFVNRPDVN GDTDAVDQQM AGFVSEAGPF  60
DADPVLKAAE REILSATKAQ RRAAAERGAL LEHGYGAMLG TGSGSMGNLG MLTASGGSDD  120
DDKASTQSVA YLSGDAASNR SYSPFDVTLD EAAENLLCEF GAPIMDGAIG LIDDEGAEIF  180
VEHNAPPLSS WMSNGNLCGL VAPNDHEPEW ASGGGAHGAY AHVPAVIDFG VPGHTEVESI  240
ASLRGQYRAL FGKDTNSNNR QWILKRLEAF RNGDDFTPPS SRFSSPLSGE DTLMNVGASR  300
FKPQASPKRA AGKRQVKSAR SLYDDDAMDE HESPRRGVAA KGRGGKGAKG KRSAEATLPK  360
SAHKKAKSVS DAESNDGDIG KKGSGRAAGK PAGRGKPGEN GTGRRSKHHN PWALEEAEAL  420
VRGVAQCGGG KWADIKKLGF TAIEHRTAVD LKDKWRNLLR IAMLPQQSVK TVGDKKREIP  480
QELLAKVREL AAKQAKAKAA AESRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000583	0.0	CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416857.1	0.0	predicted protein
TrEMBL	A4RTW7	0.0	A4RTW7_OSTLU; Uncharacterized protein
STRING	ABO95150	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1276	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-19	TRF-like 6

Link Out ? help Back to Top
Phytozome	30413