PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30343
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 370aa    MW: 41336.4 Da    PI: 10.5921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30343genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06171191626
              -SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
              C +++ +G C++G+ C+F H+
    30343 171 CLDWLNMGRCRFGEECQFEHD 191
              899***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.624165193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5169192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4171191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVAGVGKGKK NAFVALLGRA VRAEDDFARA LVESSRDYAS WAKLARARGR REGDAHADAL  60
RLLDSKGHLL NVLDRACEVE DGDDGAKDEV ERARRVREAW TKTKATQRAK FEKSGGAEGV  120
AEARLRKREA KERINASRKE REAREARDKE RKEARLEYAT KVHEARSAGA CLDWLNMGRC  180
RFGEECQFEH DAMSRGNLKD LAVKVGAETG DVKRERNQTE KAERKARAKA MREAGGGDDE  240
DTLGGRFSSS EDESDDDEGD VPGFLKIERA RRAAEALLAT NKTSSSKTNK DAGKSATKKA  300
KHFNEKQLER KQKFLKEGKN QPFVKKGMKK RPQPTESAQK NKKKKPRRAD SERKQKRKGM  360
ARTFFGGDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328344KKRPQPTESAQKNKKKK
2343357KKPRRADSERKQKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005830.0CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416827.10.0predicted protein
TrEMBLA4RTQ20.0A4RTQ2_OSTLU; Uncharacterized protein
STRINGABO951200.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP468333