PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 229aa MW: 25584 Da PI: 5.023 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 51.3 | 1.9e-16 | 2 | 49 | 15 | 67 |
E2F_TDP 15 kllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67 +ll++s++g+++lne+a +L v ++RRiYDi+NVLe+++l++k +kn++ 30146 2 TLLRESPKGTLDLNEAAVAL---LV--QKRRIYDITNVLEGIGLVTKVSKNKV 49 5789999*************...89..***********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.7E-14 | 1 | 53 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.3E-16 | 2 | 49 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.3E-16 | 2 | 49 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-11 | 3 | 49 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 2.62E-6 | 76 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MTLLRESPKG TLDLNEAAVA LLVQKRRIYD ITNVLEGIGL VTKVSKNKVV LRHVHSQPSL 60 AEYEHQANVA SNTVVDDKLD QMKEIIRSIF ADTQHEAGIF IPESEMLECA ALSRAMLIAT 120 SAPTGTTLQV PSPFGSENLI PHYRLLLATD DEYSDGMQVF VLSSETNKSS SSERVRCGEY 180 ENPPIPEMLG NRAMHEPHPE KKCHDDSYWF VEKETKLEVN VNELYKTN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000582 | 0.0 | CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416444.1 | 1e-170 | transcription factor E2F | ||||
TrEMBL | A4RSR6 | 1e-169 | A4RSR6_OSTLU; Transcription factor E2F | ||||
STRING | ABO94737 | 1e-170 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3258 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22220.2 | 2e-24 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30146 |