PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29862

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Nin-like

Protein Properties

Length: 645aa MW: 68652.6 Da PI: 9.7427

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29862	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.4	1.8e-25	137	186	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +eis+e+ls++F+lp ++A+++Lgv+lTvLKr+CR+yGI+RWP+Rk+ksl 29862 137 SEISQEELSSCFHLPSEAACRKLGVGLTVLKRQCRKYGIARWPFRKMKSL 186 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	122	206	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-19	139	186	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
METIERARGR GDANDGTTSR REARGDANER SETTASEDAM ETGGRDEDAN AMGKDDGNGK 60 GVVHGMSISA AIAARPTMDA ELTTKAVVSH ALAKNAHLRK VAGESAGKDP KKGKPKKEKP 120 PNQSRENRRV RQFRSASEIS QEELSSCFHL PSEAACRKLG VGLTVLKRQC RKYGIARWPF 180 RKMKSLDRLI TNVQAGISPG DQNKLLVKSV EELEDQKRRM EECAVLDLDD TTKKLQQAYS 240 KANHKARRNR SDASRIRAVA AAQAVRELQA RARGGYGEEP NGASGMLLDL AHELAMGSEN 300 GDDDDEGSSD DGFDNEDEDV TTDADAGAST PASRGAKSAS GATTPDRITP TNNSDGTPLQ 360 SAPQLLSNTP SDAGAAIPNI VKDEGGDGGA PSSNVMVQKG SANANEFVKV DKVLTAVRGT 420 WSPARPARKT DDLDGAEAFL SPASRRKGGK LGEALSDDEY EKITMSVQKR RGRPPGPSKR 480 GRKRKGAEVE DDPLASLAAA ALDSMGTTKK TAVAATRGRP KSVPAADKTS RLTASGKITA 540 ASKYRMDVPA VTEDHPAYGL TAGFTAKGAR SGVASRLSQV ERSDLEHLLR ERLKKGKMAL 600 CDAFGIAPAE YDQHFDPKLQ ATSLTNAVEK LAVKSAAKMR RLEA*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

METIERARGR GDANDGTTSR REARGDANER SETTASEDAM ETGGRDEDAN AMGKDDGNGK  60
GVVHGMSISA AIAARPTMDA ELTTKAVVSH ALAKNAHLRK VAGESAGKDP KKGKPKKEKP  120
PNQSRENRRV RQFRSASEIS QEELSSCFHL PSEAACRKLG VGLTVLKRQC RKYGIARWPF  180
RKMKSLDRLI TNVQAGISPG DQNKLLVKSV EELEDQKRRM EECAVLDLDD TTKKLQQAYS  240
KANHKARRNR SDASRIRAVA AAQAVRELQA RARGGYGEEP NGASGMLLDL AHELAMGSEN  300
GDDDDEGSSD DGFDNEDEDV TTDADAGAST PASRGAKSAS GATTPDRITP TNNSDGTPLQ  360
SAPQLLSNTP SDAGAAIPNI VKDEGGDGGA PSSNVMVQKG SANANEFVKV DKVLTAVRGT  420
WSPARPARKT DDLDGAEAFL SPASRRKGGK LGEALSDDEY EKITMSVQKR RGRPPGPSKR  480
GRKRKGAEVE DDPLASLAAA ALDSMGTTKK TAVAATRGRP KSVPAADKTS RLTASGKITA  540
ASKYRMDVPA VTEDHPAYGL TAGFTAKGAR SGVASRLSQV ERSDLEHLLR ERLKKGKMAL  600
CDAFGIAPAE YDQHFDPKLQ ATSLTNAVEK LAVKSAAKMR RLEA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	467	484	QKRRGRPPGPSKRGRKRK
2	468	484	KRRGRPPGPSKRGRKRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000582	0.0	CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416067.1	0.0	predicted protein
TrEMBL	A4RTI8	0.0	A4RTI8_OSTLU; Uncharacterized protein
STRING	ABO94359	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-23	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	29862