PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 27568.9 Da PI: 4.7682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 102 | 153 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++++ rE+rRRd +Ns+feeL +l + +++ sKa+++ A+e Ik L 29509 102 KKTKSTREKRRRDVLNSRFEELSAVLEPgE--SQGESQSKATVVFAATELIKRL 153 7899************************88..48888***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-9 | 93 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.68E-8 | 98 | 156 | No hit | No description |
PROSITE profile | PS50888 | 12.15 | 100 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 101 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-10 | 102 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-6 | 106 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDGATPTADW LSDFFDSFDA DDVGAFDGAN AFADVPTEVI GGEGPRVRAA GTKRKATEEA 60 DGSQDERVAV TATSVAATSV AATTAAATTA TGRSNVLSEG AKKTKSTREK RRRDVLNSRF 120 EELSAVLEPG ESQGESQSKA TVVFAATELI KRLRVEHARL ANMIMRFQED NLLKTELTQK 180 LAAERDQLMQ EKTHLLREKL RIEAQLQGFL TSMPFASPAD GMVSTKSASG VAAWTVPMPF 240 MPASEEGEDV TLRAPVA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000600 | 0.0 | CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422567.1 | 0.0 | predicted protein | ||||
TrEMBL | A4SB73 | 0.0 | A4SB73_OSTLU; Uncharacterized protein | ||||
STRING | ABP00884 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5460 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29509 |