PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | Nin-like | ||||||||
Protein Properties | Length: 231aa MW: 26384.2 Da PI: 8.0026 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 29.7 | 1.3e-09 | 63 | 106 | 6 | 49 |
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 +l++l ++ +p ++Ak g+ +CR+ G+ RWPhR 29489 63 DLHELYAFLMMPADKVAKAFGMPSGSFRLQCRKAGVTRWPHRHA 106 5788999999********************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 12.605 | 37 | 129 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.8E-6 | 63 | 108 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRTIANERDA LAATEARAAR AILDHRLGII DDDQRARRAA LVAKQFAERE ALAIDEELDE 60 PFDLHELYAF LMMPADKVAK AFGMPSGSFR LQCRKAGVTR WPHRHAQAVV GCHEYIAQLM 120 QHTLAQFEYS IDDMEMCDVN YYSHRARSAF LRMDYAMTDL LEDLDTLEKY ARALEGMFLR 180 TGTFDSVRSP EAFNRIRTKI YKHRSKVGCF VRKLFPSNLG GAIRPSLFDK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000600 | 0.0 | CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422716.1 | 1e-171 | predicted protein | ||||
TrEMBL | A4SB51 | 1e-169 | A4SB51_OSTLU; Uncharacterized protein | ||||
STRING | ABP01033 | 1e-170 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13314 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | 29489 |