PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | LSD | ||||||||
Protein Properties | Length: 243aa MW: 25188 Da PI: 8.5001 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.5 | 1.2e-14 | 12 | 40 | 1 | 25 |
zf-LSD1 1 Cg....gCrtlLsYPrGApsVRCalCdtV 25 Cg gC++lLsYP+G+p+VRCalCd+V 29103 12 CGdarrGCGALLSYPTGSPLVRCALCDHV 40 777777**********************9 PP | |||||||
2 | zf-LSD1 | 40.5 | 4.5e-13 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC++++++P++A++VRCa+Cd+V 29103 75 CVGCDVVMRFPADATHVRCAMCDAV 99 ************************9 PP | |||||||
3 | zf-LSD1 | 39.4 | 9.7e-13 | 148 | 172 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YP G+ sVRC+ C +V 29103 148 CEGCRVTLAYPGGSASVRCSACGAV 172 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06943 | 3.9E-11 | 12 | 40 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-6 | 18 | 41 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-6 | 74 | 100 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-8 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.7E-8 | 146 | 173 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-9 | 148 | 172 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MTRARATSEI TCGDARRGCG ALLSYPTGSP LVRCALCDHV TRTPAATDPT RRRAVAFDFD 60 FDDAGARDRE AQARCVGCDV VMRFPADATH VRCAMCDAVN VNARTGTRAP RASGTRASSA 120 LAARDAARER ATRNADDAWA RGTAYVRCEG CRVTLAYPGG SASVRCSACG AVTRCAERAT 180 PSTTGEGSSV KSARGGDHAT LTSDNLVVVE NPPTVSESGK IVSNIAVGVR LGSDGGESRR 240 GE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000581 | 0.0 | CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001415612.1 | 1e-169 | predicted protein | ||||
TrEMBL | A4RRQ7 | 1e-168 | A4RRQ7_OSTLU; Uncharacterized protein | ||||
STRING | ABO93904 | 1e-169 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-13 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | 29103 |