PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 535aa MW: 57019.2 Da PI: 10.9221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 298 | 350 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +W+ E + lv++v+ +G g+W+ I + +R++ ++k++w+++l 27356 298 PWSLPEVKALVRGVTHYGRGQWADIKALRLdgvsdalVNRSAVDLKDKWRNLL 350 8***********************99988889999999*************96 PP | |||||||
2 | Myb_DNA-binding | 29.6 | 1.6e-09 | 440 | 489 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+ E e lvd+v++ Gg +W+ I + ++Rt+ ++k++w+++l 27356 440 SPWTAVEAEALVDGVERCGGCRWTVIKKSDDpalERRTAMDLKDKWRNLL 489 58*************************99999999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.077 | 291 | 354 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-12 | 294 | 352 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-5 | 295 | 352 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 297 | 351 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.49E-17 | 297 | 351 | No hit | No description |
Pfam | PF00249 | 1.8E-5 | 298 | 350 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.312 | 434 | 493 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-11 | 436 | 490 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-6 | 438 | 491 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-6 | 440 | 489 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.38E-18 | 441 | 489 | No hit | No description |
SuperFamily | SSF46689 | 3.04E-14 | 441 | 517 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MTPPAIAVRR HAAEMRRDGD AKAREGGGAA TRTAAATAAG GFPFAMPGNA MMMAAFGPNV 60 EGLRRQAAVM KGGMTDGGVT APMIFAPMPF NPFAMMPMVG MGATPAGATF RGGVEDEKKN 120 SPSASDGSHR TTTHVDGEDV EGGERVEAGQ EATCSGRGLA MMIPPPPMLT VPTSLKNARL 180 EALSVPDRTQ TPGIQSPFSA ANVLCAMMTR GSDDENEHPT APAPKPRGQG KRRSEYLGPL 240 SVRCPKKRRT MKTSRARSNL TTFDAAPSAA PKPPSAPEAA RFDVGAMAAP AKPKTHRPWS 300 LPEVKALVRG VTHYGRGQWA DIKALRLDGV SDALVNRSAV DLKDKWRNLL RVAMLPALYK 360 RREVNGVPAD ILEQVRVLAS SKGNEGAQRS SKENRAPRSG TSVATVKAAA TDAVTAVKAE 420 PIAASPSSNV KGVRRSKHHS PWTAVEAEAL VDGVERCGGC RWTVIKKSDD PALERRTAMD 480 LKDKWRNLLQ LASLPAQSRR KQDTPPEFLE RVLDLEARYG NARRKGRKSV VKTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 248 | KRRSEYLGPLSVRCPKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000594 | 0.0 | CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001421395.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S754 | 0.0 | A4S754_OSTLU; Uncharacterized protein | ||||
STRING | ABO99688 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1276 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 1e-13 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | 27356 |