PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 27102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 207aa MW: 22827.4 Da PI: 10.2894 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51 | 2.4e-16 | 118 | 179 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R++ t++q ++Le+lF ++ p +++ +e++k+l ++e +V++WFqNrR +ekk 27102 118 RGPRWSGTPDQYKILEDLFLAgEQPPVRARLTEITKRLqehgPIQEHNVYNWFQNRRSREKK 179 569*****************98999*************99999******************8 PP | |||||||
2 | Wus_type_Homeobox | 76.7 | 3.3e-25 | 120 | 180 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+ tp+Q kiLe+l+ +G + P ++++++it++L+e+G i+++NV++WFQNr++Re+++ 27102 120 PRWSGTPDQYKILEDLFLAGEQPPVRARLTEITKRLQEHGPIQEHNVYNWFQNRRSREKKR 180 7**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-15 | 112 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-12 | 113 | 184 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.957 | 115 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-6 | 117 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.80E-7 | 118 | 180 | No hit | No description |
Pfam | PF00046 | 8.1E-14 | 118 | 179 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MPHNAATVTR PGEGKAPPRG AAVHMTERQL YAFRQQIAAY AHICQQLLQI TTVSATQQTP 60 RQREARYEVP GSAGAHAGAN ASAQAFAAMA ASGTANAQQR KTYEEGQRVG RGEDKGVRGP 120 RWSGTPDQYK ILEDLFLAGE QPPVRARLTE ITKRLQEHGP IQEHNVYNWF QNRRSREKKR 180 LAEERASNDA ALDNQPLASR YGVGER* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000593 | 0.0 | CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420936.1 | 1e-151 | predicted protein | ||||
TrEMBL | A4S6F9 | 1e-149 | A4S6F9_OSTLU; Uncharacterized protein | ||||
STRING | ABO99229 | 1e-150 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6445 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20700.1 | 2e-18 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 27102 |