PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 26956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 130aa MW: 14535.3 Da PI: 6.2349 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 24 | 45 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+Cg +r + +H+r + 26956 24 VCPHCGFIGKRAAGFANHLRAC 45 8******************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MKKLKTLSAN QPLASTHKKS QSLVCPHCGF IGKRAAGFAN HLRACRRRHE DEPTPTPSPD 60 EAASEQHERR EEQQEQEEAR ARHANTIDIL EDTIDILEDT RRLAGDQITL SLPIIVLSPE 120 CRMTESPEC* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000592 | 0.0 | CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420864.1 | 2e-90 | predicted protein | ||||
TrEMBL | A4S616 | 5e-89 | A4S616_OSTLU; Uncharacterized protein | ||||
STRING | ABO99157 | 8e-90 | (Ostreococcus 'lucimarinus') |
Link Out ? help Back to Top | |
---|---|
Phytozome | 26956 |