PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 25549
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 404aa    MW: 45873.1 Da    PI: 9.8639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
25549genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11190230245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      g+W +eE e l++  ++lG++ W++Ia+ +g  R +  c+++w+
            25549 190 GKWQKEETEALLEQYTKLGPK-WSKIAEIVG--RPASACRDKWR 230
                      89*****************99.********8..**********8 PP
2Myb_DNA-binding31.93.1e-10241306246
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      g W++eE ++l ++vk++                         +W tI+++mg +R +  c  rw++
            25549 241 GHWSQEETDKLCELVKEHFRQrgaeagcgpgtgnehlslrdniNWVTISAKMG-TRNEQACLQRWYQ 306
                      78****************877********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071783101185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-4103120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-4156192IPR009057Homeodomain-like
SuperFamilySSF466892.42E-12163234IPR009057Homeodomain-like
PROSITE profilePS5129414.576184237IPR017930Myb domain
SMARTSM007176.3E-8188235IPR001005SANT/Myb domain
PfamPF002493.8E-9190230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10193230IPR009057Homeodomain-like
PROSITE profilePS500907.817235308IPR017877Myb-like domain
SuperFamilySSF466894.26E-10238322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-11238307IPR009057Homeodomain-like
SMARTSM007171.9E-10239310IPR001005SANT/Myb domain
PfamPF002491.6E-6241306IPR001005SANT/Myb domain
CDDcd001673.41E-5243307No hitNo description
PROSITE profilePS500904.403309362IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MARTRGEEPA EKSATIALAD IAAATETIKK AHMKKESKKR KAELDVRAPL SKRQLDDDAA  60
YAALMHDKSK DADLPVAQAS EKELQTVSDS SEWDVKFPGQ RFGQWSTLEV EQMKRSLEKW  120
ANEHGLAEDF MNGNYEFLFN RRQKQGGKGA HLPLSERRAF IEVARETPTR NAKQIYGWIL  180
RNMDKKSKSG KWQKEETEAL LEQYTKLGPK WSKIAEIVGR PASACRDKWR LAKGGEHKKS  240
GHWSQEETDK LCELVKEHFR QRGAEAGCGP GTGNEHLSLR DNINWVTISA KMGTRNEQAC  300
LQRWYQISPP MTSTGEWDVE QDYEMLNNVI KYRSMTAEAV PWASTVRGRD LSRIMRRWKL  360
LSSKISGHVD MAFRELVLQV CKSKDYKDLV IKAQALVKSS SSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A2e-11153328135301DNA-binding protein reb1
5eyb_B2e-11153328135301DNA-binding protein reb1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12839KKAHMKKESKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005940.0CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421504.10.0predicted protein
TrEMBLA4S7S20.0A4S7S2_OSTLU; Uncharacterized protein
STRINGABO997970.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-22MYB_related family protein