PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24922
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Dof
Protein Properties Length: 889aa    MW: 92107.1 Da    PI: 8.3897
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24922genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof83.22.7e-26477532459
  zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
             ++++c+rC s++t+fCyynn   +qPr++C++C+ryWt+GG+ rn+P G+grr+ +
   24922 477 SHRPCARCGSEKTRFCYYNNGLPTQPRHYCRSCQRYWTEGGTQRNLPKGSGRRRVE 532
             5789*************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.55E-25142262IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.0E-27142264No hitNo description
SMARTSM004482.8E-19143261IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.573144265IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.6E-16145260IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.19E-21146257No hitNo description
PfamPF027012.2E-22478532IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.468479533IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-18480530IPR003851Zinc finger, Dof-type
PROSITE patternPS013610481517IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MARASDVGEA PSEREIAGAY GAAATLLGSS AGARGGARAR RGEIPTSRVG ALVRALGAHV  60
GAHEDDMLRR CEKIVDPEGR GSFALGRLRD ALAALRDEGR LPTREEEGGK GTGEVAMTTP  120
VVSTGRRATR ATATATTTTD DRKSVLIVDD VASVRKFQAG QIGKMGYQSI EAGEGAEALR  180
LYGENHAEIQ GILMDLMMPT MDGYEIATGI RAMEEKQALR RMPIIAVTSL TDQELKEHAS  240
SVAFDCHVDK PTSMSKLATI FESMRMAPSL SAAELQAIGA ANAAKLDPHG TKRSHLPVSS  300
SDTTSDDGKH GGSNDGSSDQ NGRKGSNSDA DPDARSSGDS GNEQRYVSQR ADGPCNSSKR  360
PGATASGATA VAPKKTGTSD NGSGGNSNNG SSDASRQGVA DDAEEKSTVD KAAPADRNTT  420
KQLSPARGTQ TGTKAHESTK TDTAVAAEAM GKTTTTQDRT TTGVNAVDAG SKPVESSHRP  480
CARCGSEKTR FCYYNNGLPT QPRHYCRSCQ RYWTEGGTQR NLPKGSGRRR VERPDGAAAL  540
TAPVKDAAKK NALSTAAAIA HGANAQNEMQ RAILVLMTQV VGFDVDHAAN NAGMVASRAG  600
EEVAQIVLQN LGHSSEAIEI AVTLAKTTGW RIGISVSAVA TAAVSQGLNQ AEIASLISTQ  660
LPFLANALVR EVSEQVKTME LSRKSPTNDS DSGGSGGTGE NGGKSATSAK SNSTLTGVKA  720
EPATVASVQA LQTQVTQRWL NDLQYVDDGN ARQAASARVG AVTVQRPSAS GSQPQPQGSG  780
ASNASAMPWT QGQTSRVTPV SSASGFQPAL TSAFTPSMAA PRMAMNMFGA HPMMNQPMNP  840
AWLSMMNRFG SSVQPSGAPS RGPGTPQAHE AFMKALDTLG GGSSEPPN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005880.0CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419332.10.0predicted protein
TrEMBLA4S1A90.0A4S1A9_OSTLU; Uncharacterized protein
STRINGABO976250.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1304633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-20cycling DOF factor 2