PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24740
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 724aa    MW: 79897.6 Da    PI: 6.7017
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24740genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.91.1e-24315363351
  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
             + i+le+l+++F++++k+AA++Lgv+ T+LKriCRqyGI+RWP+R ++s
   24740 315 WGITLEVLQQNFHKHLKQAASDLGVGSTTLKRICRQYGIRRWPRRSLNS 363
             579*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.051300385IPR003035RWP-RK domain
PfamPF020421.6E-20317363IPR003035RWP-RK domain
SuperFamilySSF542772.98E-16529619No hitNo description
Gene3DG3DSA:3.10.20.2406.8E-12536615No hitNo description
PROSITE profilePS5174516.751537618IPR000270PB1 domain
SMARTSM006662.1E-10537622IPR000270PB1 domain
PfamPF005641.5E-9538615IPR000270PB1 domain
CDDcd059921.96E-8551611No hitNo description
SuperFamilySSF542777.57E-11642708No hitNo description
Gene3DG3DSA:3.10.20.2409.4E-9643708No hitNo description
SMARTSM006660.64645722IPR000270PB1 domain
PfamPF005641.7E-6646706IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006107Biological Processoxaloacetate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050152Molecular Functionomega-amidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MLNVAIAGSD GFTPGSGAPG RVFATNRPEW TPSVQCYHPS EFPRNSLAIE CGCYSQLIVP  60
VNAKPQSTTP FALLEITFLH VLDNMGSVYS HVVREMTNAG LHTPISETLA PPPVLMDKIA  120
GEVARLKVAE TQKGLQMICS RLEIPFAQIW IPHDVDGTLI CVGTPYYQKS NHFLHYRNAS  180
MNLAISQHTG SLSKVWKNGS MVWMHDLSTL SHRDFLLKHS CDLLKLQAMC ISKIALKGVT  240
SGQPLQVLVE IFLDPSLKSP RDQAKTVQSF WSSVEADLNA SVVTDTDKTW LEEMKKNQTA  300
SSSGANPDAA GTALWGITLE VLQQNFHKHL KQAASDLGVG STTLKRICRQ YGIRRWPRRS  360
LNSKNGHMSD ILAKSIATGA TMSDDGAGES VHGGASCVSH TSEIGASGTL PSQSIKSHSL  420
RDIATFSPTT SEKNKRALEQ RVHRGGNLGA FWQGEGVSKM QRGMSWHGNN QARDALDFDF  480
PNRYEQSVHG VYNFNMPPPP MDQSVRGAST YNALSLDASE EMASFIDKLV KEPEKEPVVV  540
KVQVRDVLIR VRLVTNERYV ELVDALTDLL DLQMSSCKLK YQDDEQDWCL LRNQEDFDEC  600
WAFCTRRGSS CTMRVKLTIE EGVETKSLFK PQRARAEVPD AQAKPISVKA SVGEDVLRFK  660
LTTEMSCDDI VAKLNLAENS SQSVTLCYQD EDEDWIRLGG DYDLAELRHV GSATGALKLQ  720
ANY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005870.0CP000587.1 Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418584.10.0predicted protein
TrEMBLA4RZJ80.0A4RZJ8_OSTLU; Uncharacterized protein
STRINGABO968770.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP547469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.12e-21Nin-like family protein