PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24295
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 992aa    MW: 108539 Da    PI: 6.6433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24295genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05290313223
              EETTTTEEESSHHHHHHHHHH..T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
               C+ CgksF++ ++Lk H+++  H
    24295 290 ACTECGKSFKNAHSLKIHQSKmkH 313
              6******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355310111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280289313IPR007087Zinc finger, C2H2
SMARTSM003550.51289313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302289318IPR007087Zinc finger, C2H2
SMARTSM00355290343363IPR015880Zinc finger, C2H2-like
SMARTSM0035584417439IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871483506IPR007087Zinc finger, C2H2
SMARTSM003552.7483506IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280485506IPR007087Zinc finger, C2H2
SMARTSM00355190566593IPR015880Zinc finger, C2H2-like
SMARTSM0035539624650IPR015880Zinc finger, C2H2-like
SMARTSM003550.12699722IPR015880Zinc finger, C2H2-like
CDDcd061502.79E-32862970No hitNo description
SuperFamilySSF552984.54E-15862972IPR013813Endoribonuclease L-PSP/chorismate mutase-like
Gene3DG3DSA:3.30.1330.401.8E-13862973IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010427.7E-10863969IPR006175YjgF/YER057c/UK114 family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MSAEGGLPGQ PPASEVAAVV SDGKVDAGAG DGNEVQTATP ARSPGQGANG SPNSDKTTKD  60
GEVANEAPAR TPAPALAVSS PTTIDVEVPT PRGVDQMSPD GNREYKIYKD IECCFCGAQK  120
KFNGYLAFKK HVVSYCSAKP EETFAEYQQH VEKYWAEQPA MDQAEMVSAF VMEDENDKDE  180
TDRDSDADDD GPRSDTVKHR AEAEATHNAD SDDDRPANKA ALLKTPENLF DDVSNVDDKL  240
TANESTEPNR KRRTAARPSR YTVGIDDEDE RAASRGRDID KSTNESQECA CTECGKSFKN  300
AHSLKIHQSK MKHRGELIVP LTAGAVEKKN KTQASVIVTN HSTACDVCGV SVKSPAGLVT  360
HKARWCKGAK SAATSVPNAQ VVTKATDKAP PKIASEAHTP LKELSVGAKS RKCLLREESG  420
CEFKGTSFDD LVRHMQVEHG VKVTRIGKQS AQGESPGDEP AVEEQSVRPQ TETTILRIFH  480
TQRSCAECSA KFPNNSGLIA HYKDAHNVRA FITAKEFKEA EALMNSSSDA SLPTSEPKPS  540
LSKPNKLTHE TRDTDRPSGK SKKTQITCEY CQTYTGFWNA GFAAHLRSCK LKHPQTSPLE  600
EEPLNVGVSF PGPPRTKEMD PGVRFCDECA AGDFKCKSFR QLCTHYKKEH NVELIAAAAV  660
IEDRVALNQT DMEEVDETVV HDKGVHSSTK HMEILTDQLQ CPECEFKAKQ HRGLCTHMRM  720
KHKTIPIPVE PPSRRKRSRA ASVTAEDETH ALVPVKRMTR ELDDALPGNE IVEVKNFQQL  780
VNSFKELSAA HKELVRSHEE LARSHEIATR TNVQYEDRIA VLESGTSQGG DRRRGAGRGA  840
LALHAPDANT QVVYHNPGGL DCSPVVTWGR QVWLSGITCG GVVEPTFTGQ MRRVFDNLVR  900
LLVMAGTDVA HLLQVKIHLK DIREMEAVCD IWDRFFSDAG ITREHRPCRH ITQAVLSNAK  960
LQVEMFAEAV LPGEGEQAFP SGLPPKRIAN A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005830.0CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417056.10.0predicted protein
TrEMBLA4RV110.0A4RV11_OSTLU; Uncharacterized protein
STRINGABO953490.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP543744