PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24137

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 1190aa MW: 129742 Da PI: 9.5938

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24137	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	724	765	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E ++v + q+G++ + +I++t+ +R+l +k ++ + 24137 724 EWTDMEKTKFVSGLLQYGKD-FVAISSTIR-TRSLDAVKQFYED 765 7***************99.*****.*******9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15784	2.1E-6	250	317	IPR031557	N-CoR, GPS2-interacting domain
SuperFamily	SSF46689	5.76E-12	576	631	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.164	582	633	IPR017884	SANT domain
SMART	SM00717	2.8E-7	583	631	IPR001005	SANT/Myb domain
CDD	cd00167	2.43E-6	586	628	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-5	586	627	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.36E-9	713	770	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.467	720	771	IPR017884	SANT domain
SMART	SM00717	9.6E-4	721	769	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence Send to blast
MRTEPGRGAA PAPRRPSMFD YARGRDDDRA RAATATGGPP PGMTPAVPTM GRMNAAPRPG 60 FDAAPPPGMG AARPSLLASV RERPSLLSQQ RPPAVRVEAA RSGTGASSGM ESGEIGIGSA 120 RATPTPTPTS DATPKKRKIG GWGQALARAK TPTTAGGTDA PSSLRGEEVA DEGEVRGAPG 180 LGRGEESMGS FGDLRAKAGS PASATATPQF KDASTPTSDR GGWGAATARA QTTPATAEMK 240 ATPKAASVDP ETVKKAKAAE QRLKVTKEAL LGQMERVDGE VASLEKELQA LKNSSEEEKL 300 GAAAGSKDEI SRHKKETEAL RQRLSNAERS AQRAQDFAAQ KMREASVLAR DASMKRAQQR 360 GSDDVKRLNK DAAVFAASAI QKMLERQEAR RDRIERDMEH NKELAAKSIV RVKNEYGLPL 420 PEDIARVDFD AVVAHVVEGA KTPYMQEVAR KVTEVLQKRK DAVADKNYTN ALAYLKQREI 480 WRVKIIQEAN DRLAKEFVGG KKTFTPGSRA SGRNRSTNDL SGVARSEYEE MQMIKALQRT 540 EELRHMTTIP NMILDPEERR CAIFDSRNGL VEDPVAERDR INLIRPWTKA EKAIFHERFA 600 SYGKNFRRIA EHLEGRDTGD CVMYYYKFQK TDDGFRGRRR AAMKKRRAFA DAQRMRAIDP 660 ATIEAQREER AAPTAEARLE RAALAAAAKA AKAKARAEKA KIKAAKEAEE AKQNASKTPS 720 KGPEWTDMEK TKFVSGLLQY GKDFVAISST IRTRSLDAVK QFYEDNRELM DFDSLVGETS 780 VATVVTDIPS SAPTSSLLHG GDARANSKSF VNTVLDFNLR RALVASCVGL SALAGCAMHA 840 RASSSSTAAL GDAKGVDLLI GQTKFPRTVK LLPRDAPERA FETTKSNWNL YHVDGDKDVE 900 RGVMHDFADW PTDELREASI NLKVKDSAAY EAFDAIHSEF ERLNADRINA RADVGPAFSA 960 LLAWEKAKEE GLSSLIIATP DAYINSHCGP PLEFDSFILS FLLRGPKKWD VLFLDRGERG 1020 VNEDNLRHPE ALFSNKAWEK PYVLYKNTAT IVGEALPSNF YMVSKSFMDG ISAHLKATPL 1080 TNVDWWINRL CENGDLECFS YNAENWYDGL TSERKAKMGE PHARAPIVDT TPKVDATPAV 1140 VESAENVTAS VADASAESVK ESQLGVAQRP ESVVRSTRVV AASEAGKFI*

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence Send to blast

MRTEPGRGAA PAPRRPSMFD YARGRDDDRA RAATATGGPP PGMTPAVPTM GRMNAAPRPG  60
FDAAPPPGMG AARPSLLASV RERPSLLSQQ RPPAVRVEAA RSGTGASSGM ESGEIGIGSA  120
RATPTPTPTS DATPKKRKIG GWGQALARAK TPTTAGGTDA PSSLRGEEVA DEGEVRGAPG  180
LGRGEESMGS FGDLRAKAGS PASATATPQF KDASTPTSDR GGWGAATARA QTTPATAEMK  240
ATPKAASVDP ETVKKAKAAE QRLKVTKEAL LGQMERVDGE VASLEKELQA LKNSSEEEKL  300
GAAAGSKDEI SRHKKETEAL RQRLSNAERS AQRAQDFAAQ KMREASVLAR DASMKRAQQR  360
GSDDVKRLNK DAAVFAASAI QKMLERQEAR RDRIERDMEH NKELAAKSIV RVKNEYGLPL  420
PEDIARVDFD AVVAHVVEGA KTPYMQEVAR KVTEVLQKRK DAVADKNYTN ALAYLKQREI  480
WRVKIIQEAN DRLAKEFVGG KKTFTPGSRA SGRNRSTNDL SGVARSEYEE MQMIKALQRT  540
EELRHMTTIP NMILDPEERR CAIFDSRNGL VEDPVAERDR INLIRPWTKA EKAIFHERFA  600
SYGKNFRRIA EHLEGRDTGD CVMYYYKFQK TDDGFRGRRR AAMKKRRAFA DAQRMRAIDP  660
ATIEAQREER AAPTAEARLE RAALAAAAKA AKAKARAEKA KIKAAKEAEE AKQNASKTPS  720
KGPEWTDMEK TKFVSGLLQY GKDFVAISST IRTRSLDAVK QFYEDNRELM DFDSLVGETS  780
VATVVTDIPS SAPTSSLLHG GDARANSKSF VNTVLDFNLR RALVASCVGL SALAGCAMHA  840
RASSSSTAAL GDAKGVDLLI GQTKFPRTVK LLPRDAPERA FETTKSNWNL YHVDGDKDVE  900
RGVMHDFADW PTDELREASI NLKVKDSAAY EAFDAIHSEF ERLNADRINA RADVGPAFSA  960
LLAWEKAKEE GLSSLIIATP DAYINSHCGP PLEFDSFILS FLLRGPKKWD VLFLDRGERG  1020
VNEDNLRHPE ALFSNKAWEK PYVLYKNTAT IVGEALPSNF YMVSKSFMDG ISAHLKATPL  1080
TNVDWWINRL CENGDLECFS YNAENWYDGL TSERKAKMGE PHARAPIVDT TPKVDATPAV  1140
VESAENVTAS VADASAESVK ESQLGVAQRP ESVVRSTRVV AASEAGKFI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000582	0.0	CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416502.1	0.0	predicted protein
TrEMBL	A4RSE6	0.0	A4RSE6_OSTLU; Uncharacterized protein
STRING	ABO94795	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	4e-18	MYB family protein

Link Out ? help Back to Top
Phytozome	24137