PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 23972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 630aa    MW: 70453.8 Da    PI: 4.7511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
23972genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09537587244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44 
                      ++WT+eE+  l+++v+++G+g WktI +           + Rt  ++  +w
            23972 537 KNWTPEEETALIEGVEKFGSGKWKTILADDArgknvfaaNARTNVDLAKKW 587
                      58************************7643334555555555555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.143531591IPR017877Myb-like domain
SMARTSM007173.2E-5535593IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-12536614IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-13537592IPR009057Homeodomain-like
PfamPF002492.6E-7537564IPR001005SANT/Myb domain
CDDcd116601.18E-14537592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MATMATRDAR ATARPTRDAM LWTIEELASA GVDATTLRNL LPVGLAGEGA RAARARKRVR  60
HFFLLSASIA AIEGAEGEET EKSLEAHRDA MARARDACFQ EDDGDEEDLI GEDTEAFRAY  120
VKAAERAIEV LGMREACEGL DERRSARDET PRDAVRRVVE EWKDALLGVH GRDVDEHLDR  180
IEDAWTRKAA DRYHRLCEVE EWDEPSRALV KKALELLRAE LCGKATTLTT VQEHLANSYY  240
VPSRAKPGFT LGKRDDGVRE WVDVGARGVK RRAETNADAF VSSPSTKRVH SEETSPAKPR  300
SSPGRLGALL SKTISWVRKS VDAPAFIKSP FGKSPLGKSS RITASQTIDD VEERRTDEVE  360
TLEDDTPPSE HESEEEIMPT QVPTGSYTDE DDEDEDEDED KDKDPEPSPT QVHTGSYTDE  420
DDEDDDEDED EDPEPSPAPT EPSPAPTQTI QPAPLKRQGK VYPKAQRLVS VRAAHARSPL  480
TGSDDEYDEI EIEATPGNYL VPRVNRLQPV KTSVKQSPTR KRKYERQTTR RAPGRPKNWT  540
PEEETALIEG VEKFGSGKWK TILADDARGK NVFAANARTN VDLAKKWYHL RPSHLSNMWR  600
QHEQDQEIVA RQEKPKLDYI IDAILEGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271RGVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415671.10.0predicted protein
TrEMBLA4RS330.0A4RS33_OSTLU; Uncharacterized protein
STRINGABO939630.0(Ostreococcus 'lucimarinus')
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-09telomere repeat binding factor 3