PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 23938
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 432aa    MW: 43710.1 Da    PI: 10.4064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
23938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19225275155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            s y+GVr+++ +g+++AeIrdp+    r  r +lg+f++aeeAa a++aa+++++g
  23938 225 SVYRGVRQRP-WGKYAAEIRDPT----RgSRLWLGTFDSAEEAALAYDAAARAIRG 275
            78********.**********84....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-22225283IPR016177DNA-binding domain
CDDcd000182.26E-16225282No hitNo description
PfamPF008475.9E-13225275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-30226283IPR001471AP2/ERF domain
PROSITE profilePS5103222.392226283IPR001471AP2/ERF domain
SMARTSM003805.1E-33226289IPR001471AP2/ERF domain
PRINTSPR003672.5E-10227238IPR001471AP2/ERF domain
PRINTSPR003672.5E-10249265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MTASRGDSAM MGDDEMAAGA IGAMQGAAFA AFANPVDLSA TPPTRGFAVG SAPGFYPGVG  60
GALAGASGIG RGGNMIAGTS PNFLAGTSPG SLGSSPSFYG SSPTAIPQVV RPKAPMDRGI  120
GFPGLSSSLP GKHHIGSPNS GFSAFSPPMN LKDSPRAMAH FSSSPPVKSG GVHKPPSGAT  180
KAKKMEIARA AVNEVTAAAV AVSSMPGASM SASMPLNSSG KPQKSVYRGV RQRPWGKYAA  240
EIRDPTRGSR LWLGTFDSAE EAALAYDAAA RAIRGDAAVT NFGKDVPIPA SVRAQLPPLP  300
TRPVQGRGGT PRDDSALSGR MSKLSTSNKP AKNLEEEAEM LLMLQAADSD TKTSTPDKSD  360
SVEDQATGMD LEEDNGASSV TVGLTLRAQK SNAPPSAPAP AARIQQTDAS NAMISALKAS  420
TVSTRTRRGG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-202272821571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415607.10.0predicted protein
TrEMBLA4RRP60.0A4RRP6_OSTLU; Uncharacterized protein
STRINGABO938990.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.39e-15related to AP2 2