PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 19031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 206aa MW: 22410.9 Da PI: 4.5489 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 53.2 | 6.4e-17 | 37 | 117 | 17 | 97 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +++ lP+ar+k+i+k d+dvk+ sa+a ++ka elf+ l++ s + +kr+ ++ d+++ v r +++fl d+v 19031 37 NDTVLPVARVKRIIKLDKDVKQASADAIKCVTKATELFLEGLAVGSHAGMRAAKRKGVQYKDLESFVLRRGKYEFLHDHVW 117 4678**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.08E-14 | 32 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-12 | 41 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.6E-19 | 41 | 116 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MKEDTEKAYE AAVAAAVARG EVPEEKTADV DGKPAENDTV LPVARVKRII KLDKDVKQAS 60 ADAIKCVTKA TELFLEGLAV GSHAGMRAAK RKGVQYKDLE SFVLRRGKYE FLHDHVWAMR 120 PREGEKGDDD DDDDDDDDDD DAPSAKKAKK LADANGSRRV TEFFKPGESP TKKPANDEDE 180 IVIDAAPTQT QTAAAVIPET EIQTQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_B | 6e-14 | 39 | 114 | 13 | 88 | Putative transcription factor C16C4.22 |
5y27_B | 6e-14 | 39 | 114 | 13 | 88 | Putative transcription factor C16C4.22 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000600 | 0.0 | CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422703.1 | 1e-145 | predicted protein | ||||
TrEMBL | A4SB26 | 1e-144 | A4SB26_OSTLU; Uncharacterized protein | ||||
STRING | ABP01020 | 1e-145 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2616 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-11 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 19031 |