PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 17981
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 280aa    MW: 30484.9 Da    PI: 10.0791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
17981genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.7e-12167211150
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
            s+y+GV++   +grW+A+ r    ng  k  slg f+ +eeAaka+++++
  17981 167 SKYRGVHQTFPTGRWEAQFRR---NG--KPTSLGCFDREEEAAKAYDRMM 211
            89****************555...54..*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-10167213IPR016177DNA-binding domain
PfamPF008476.2E-8167212IPR001471AP2/ERF domain
PROSITE profilePS5103211.838168239IPR001471AP2/ERF domain
SMARTSM003804.5E-4168245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-8168214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSGIKTATRV RGDAITNARH STKGAEGEQP PEKTSSPTAT TKRRERESSE RDDWNENYSE  60
HARCNALRIG AKRDFAAAES IGIRVRGWDE KDVRDAGRAS FVGGSYEFLK PSASAATFGA  120
GFVPNGTASA SGRLSLSASP GRAGEIRQSV HKVARQKGVS SGRTYTSKYR GVHQTFPTGR  180
WEAQFRRNGK PTSLGCFDRE EEAAKAYDRM MLWCEMHASQ LAVVSASPQK QGAAQLNFDV  240
ATYTNDLHAL EHMSQDDLML ELRRLGRAQA GGQQVAFVP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005940.0CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421197.10.0predicted protein
TrEMBLA4S7220.0A4S722_OSTLU; Uncharacterized protein
STRINGABO994900.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.13e-08AP2 family protein