PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

16547

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 370aa MW: 38983.1 Da PI: 9.8036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
16547	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	144	169	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C ks+ + s+L H r H 16547 144 FVCGigGCEKSYGSASSLCAHKRArH 169 89********************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.9E-6	141	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.325	144	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	146	169	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDEAKGATAT ARGSATRAAS ARETAVRTPM IREARRRATT RTRTREGGEG GRGAREDGLK 60 FKVGGDDETR STRGASASAS GGAREAVVVG MRLDALFDAA ADRETRDSEA ATRADDLTAF 120 AAAMTPRARE RAPRRALAVY EKTFVCGIGG CEKSYGSASS LCAHKRARHP GWREAATATK 180 ATTIKKEDDE DVIDGAGDAG DAVDDDGNVF DDASMRLARK RGASGLNDAN RASALGAYFE 240 IVAADAHGRL SSANRTKRRL VRLSKDAGAC ANDPSEPAER RAAAAAAARV FATVEESVDG 300 EQERASAWLH TLDDASRAVS KTQTSSSIID ARALDPDARS HAPELVRACV RHRIARVLRR 360 AFVQAASPA*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDEAKGATAT ARGSATRAAS ARETAVRTPM IREARRRATT RTRTREGGEG GRGAREDGLK  60
FKVGGDDETR STRGASASAS GGAREAVVVG MRLDALFDAA ADRETRDSEA ATRADDLTAF  120
AAAMTPRARE RAPRRALAVY EKTFVCGIGG CEKSYGSASS LCAHKRARHP GWREAATATK  180
ATTIKKEDDE DVIDGAGDAG DAVDDDGNVF DDASMRLARK RGASGLNDAN RASALGAYFE  240
IVAADAHGRL SSANRTKRRL VRLSKDAGAC ANDPSEPAER RAAAAAAARV FATVEESVDG  300
EQERASAWLH TLDDASRAVS KTQTSSSIID ARALDPDARS HAPELVRACV RHRIARVLRR  360
AFVQAASPA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000588	0.0	CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001419200.1	0.0	predicted protein
TrEMBL	A4S1S8	0.0	A4S1S8_OSTLU; Uncharacterized protein
STRING	ABO97493	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9305	2	2

Link Out ? help Back to Top
Phytozome	16547