PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 15490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 157aa MW: 17671.3 Da PI: 10.7817 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 34.3 | 7.9e-11 | 53 | 111 | 102 | 160 |
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 + d e +r ++ + k r+P+a+n f+k+e+qr++ + d+s +e f+ a+ W 15490 53 GRGMDSEGKRLTKAQKRELKPPRAPTAFNMFMKDEVQRVRVERGDLSPKEVFTECARRW 111 3444555556666666666777************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-9 | 49 | 112 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.59E-9 | 61 | 114 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-7 | 68 | 113 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.45E-5 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MSDDERDEEM TAMELAKRLA PAFAKMAEAA HEASGMLSKF AKIPNESTLV KRGRGMDSEG 60 KRLTKAQKRE LKPPRAPTAF NMFMKDEVQR VRVERGDLSP KEVFTECARR WREKKSRTQG 120 SLQGGGSLNP VSTPPAMKDK HKKDKSHKKD KKNKDK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 0.0 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418036.1 | 1e-110 | predicted protein | ||||
TrEMBL | A4RXQ9 | 1e-109 | A4RXQ9_OSTLU; Uncharacterized protein | ||||
STRING | ABO96329 | 1e-110 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9255 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69180.1 | 6e-08 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 15490 |