PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 15409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 244aa MW: 26882.9 Da PI: 7.2766 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.2e-16 | 100 | 134 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t kTplWR+gp g ktLCnaCG++++ ++ 15409 100 CACCRTQKTPLWRNGPTGAKTLCNACGVRFKAGRV 134 999****************************8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.7E-12 | 94 | 155 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-12 | 94 | 136 | No hit | No description |
PROSITE profile | PS50114 | 13.086 | 94 | 130 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.4E-14 | 95 | 132 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.86E-12 | 99 | 136 | No hit | No description |
Pfam | PF00320 | 8.0E-14 | 100 | 134 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGDVRFVARE DRTAFAKARP YAYASEMFEN VRHVGHDLKV EDGGAWRRPT YESIVAAQGR 60 GERRERDSSV ESDHTTQSDA CARKVVVEDD GPSPEAGVTC ACCRTQKTPL WRNGPTGAKT 120 LCNACGVRFK AGRVVCDEDG NVVTLAPQSR KRSLSVDHHE RGRQLNKSNY AALHKRIKPS 180 HSSFAYTHLS DARMIELQRV GDRGAKAPFP RVHSATILTD YDGAVLLMLL HDGEESEGES 240 DED* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 0.0 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417744.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RXG3 | 0.0 | A4RXG3_OSTLU; Uncharacterized protein | ||||
STRING | ABO96037 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6335 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 2e-13 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | 15409 |