PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

14398

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 565aa MW: 62204.5 Da PI: 5.9799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
14398	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	41	63	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F++++ Lk+Hi + H 14398 41 PCPHCDRIFKQQDRLKQHIAKqH 63 6******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.002	40	63	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.871	40	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	63	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.10.110.10	5.1E-4	436	549	IPR016135	Ubiquitin-conjugating enzyme/RWD-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MGPSNAQKKA LAKAKRGIVS SGAMSSKSGF DPAQVKPKEL PCPHCDRIFK QQDRLKQHIA 60 KQHADVVAEQ SGSESVVGDG KTTKVSAKAA LIIAEREKFK EEAAKERAAN PDSKVATPFA 120 RMSCKLPSTI LREFVQKQKE YKAPVFRAKE EKLDGESTWT CKLVLRDKHK PDKDKVFFWN 180 EKCETKLEAE HRVAVVALAK IANTLPLQRL LPNQYKETFT QCEEMEKKKV EDAKKRAARE 240 EQRIARMKRL AKQEMAQVLT MSEEKRALVE SILKEDYESA SDEDEDEDED MQLEEDVEIA 300 GVNALCDKLE SLGFGREDAL AASKATKSKD IAALDGAISW LCVHVPDYRL PTVYAPKSLN 360 EGGVVLLSKT KPAQPVEIDS RPSSEDAAWL WERGYAATAC DDALRAHSSR EEAHAHLFGQ 420 VLAGISKSYE AWPTHDSDAN DEDWEDELTA IEAICGEDTV ERLPAGVRVA IDTSAGVKGY 480 LEVYRLKNGG YPAIEPPLIA FHAHGELRAE FFGATRALAK LAIDGCGAPC VYTMIEAAGS 540 LVEKVAKTHS SLQTISAADA SNRPP

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MGPSNAQKKA LAKAKRGIVS SGAMSSKSGF DPAQVKPKEL PCPHCDRIFK QQDRLKQHIA  60
KQHADVVAEQ SGSESVVGDG KTTKVSAKAA LIIAEREKFK EEAAKERAAN PDSKVATPFA  120
RMSCKLPSTI LREFVQKQKE YKAPVFRAKE EKLDGESTWT CKLVLRDKHK PDKDKVFFWN  180
EKCETKLEAE HRVAVVALAK IANTLPLQRL LPNQYKETFT QCEEMEKKKV EDAKKRAARE  240
EQRIARMKRL AKQEMAQVLT MSEEKRALVE SILKEDYESA SDEDEDEDED MQLEEDVEIA  300
GVNALCDKLE SLGFGREDAL AASKATKSKD IAALDGAISW LCVHVPDYRL PTVYAPKSLN  360
EGGVVLLSKT KPAQPVEIDS RPSSEDAAWL WERGYAATAC DDALRAHSSR EEAHAHLFGQ  420
VLAGISKSYE AWPTHDSDAN DEDWEDELTA IEAICGEDTV ERLPAGVRVA IDTSAGVKGY  480
LEVYRLKNGG YPAIEPPLIA FHAHGELRAE FFGATRALAK LAIDGCGAPC VYTMIEAAGS  540
LVEKVAKTHS SLQTISAADA SNRPP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000582	0.0	CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416284.1	0.0	Dhx57-like DEXH-box helicase, probable
TrEMBL	A4RSA2	0.0	A4RSA2_OSTLU; Dhx57-like DEXH-box helicase, probable
STRING	ABO94577	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13231	2	2

Link Out ? help Back to Top
Phytozome	14398