PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 119601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 250aa MW: 27860.7 Da PI: 5.3758 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 69.8 | 3.3e-22 | 9 | 70 | 1 | 67 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67 r ++sL+llt++f++ll++s++g+++lne+a +L v ++RRiYDi+NVLe+++l++k +kn++ 119601 9 RFDSSLGLLTTRFMTLLRESPKGTLDLNEAAVAL---LV--QKRRIYDITNVLEGIGLVTKVSKNKV 70 6789******************************...89..***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-22 | 7 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.9E-30 | 9 | 74 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.48E-16 | 9 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-21 | 11 | 70 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 3.4E-6 | 97 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLPKPGASRF DSSLGLLTTR FMTLLRESPK GTLDLNEAAV ALLVQKRRIY DITNVLEGIG 60 LVTKVSKNKV VLRHVHSQPS LAEYEHQANV ASNTVVDDKL DQMKEIIRSI FADTQHEAGI 120 FIPESEMLEC AALSRAMLIA TSAPTGTTLQ VPSPFGSENL IPHYRLLLAT DDEYSDGMQV 180 FVLSSETNKS SSSERVRCGE YENPPIPEML GNRAMHEPHP EKKCHDDSYW FVEKETKLEV 240 NVNELYKTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 4e-18 | 3 | 70 | 1 | 69 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000582 | 0.0 | CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416444.1 | 0.0 | transcription factor E2F | ||||
TrEMBL | A4RSR6 | 0.0 | A4RSR6_OSTLU; Transcription factor E2F | ||||
STRING | ABO94737 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3258 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 5e-33 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 119601 |