PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 10510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 82aa MW: 9886.58 Da PI: 9.2131 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.5e-06 | 33 | 56 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Crffa++G+Ck + C++ H+ 10510 33 RMPTCRFFAKYGECKE-PDCPYKHS 56 5789***********9.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.33E-6 | 3 | 34 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-5 | 31 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 59 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.685 | 62 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
RKNYRQTVCR HWLRNLCMKG NACGFLHQFD KSRMPTCRFF AKYGECKEPD CPYKHSLEDM 60 KDCNMYKLGF CIHGSLCRFR HV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6dnh_C | 3e-23 | 5 | 82 | 65 | 144 | Cleavage and polyadenylation specificity factor subunit 4 |
6fbs_C | 1e-23 | 5 | 82 | 64 | 143 | Cleavage and polyadenylation specificity factor subunit 4 |
6fuw_C | 1e-23 | 5 | 82 | 64 | 143 | Cleavage and polyadenylation specificity factor subunit 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 1e-135 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417675.1 | 2e-56 | predicted protein, partial | ||||
Refseq | XP_022838922.1 | 6e-55 | Zinc finger, CCCH-type | ||||
Swissprot | Q0DA50 | 1e-39 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | A0A090M0Y8 | 1e-53 | A0A090M0Y8_OSTTA; Zinc finger, CCCH-type | ||||
TrEMBL | A4RX17 | 5e-55 | A4RX17_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95968 | 9e-56 | (Ostreococcus 'lucimarinus') | ||||
STRING | A0A090M0Y8 | 2e-54 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3492 | 7 | 7 |
Link Out ? help Back to Top | |
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Phytozome | 10510 |