PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN547851.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 65aa MW: 6930.9 Da PI: 11.1992 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.4 | 2e-07 | 3 | 28 | 30 | 55 |
HHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRake 55 + LA+ +gL+++q+ +WF N+R ++ KN547851.1_FGP001 3 KMTLAQTTGLDQKQINNWFINQRKRH 28 678********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.576 | 1 | 31 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 2 | 32 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.50E-8 | 2 | 31 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-10 | 2 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.9E-11 | 2 | 27 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 6 | 29 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 65 aa Download sequence Send to blast |
MEKMTLAQTT GLDQKQINNW FINQRKRHWK PTPVAGTAFP TMEAAGGGFR HSGHGGGLAA 60 AAALP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN547851.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028884 | 1e-105 | AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds. | |||
GenBank | AC133450 | 1e-105 | AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence. | |||
GenBank | AK107296 | 1e-105 | AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence. | |||
GenBank | AP014959 | 1e-105 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-105 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879466.1 | 1e-39 | homeobox protein knotted-1-like 8 isoform X1 | ||||
Refseq | XP_025879467.1 | 1e-39 | homeobox protein knotted-1-like 8 isoform X2 | ||||
Swissprot | Q10ED2 | 1e-40 | KNOS8_ORYSJ; Homeobox protein knotted-1-like 8 | ||||
TrEMBL | A0A0D3FPL0 | 2e-38 | A0A0D3FPL0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PFX5 | 2e-38 | I1PFX5_ORYGL; Uncharacterized protein | ||||
STRING | OMERI03G32190.1 | 2e-39 | (Oryza meridionalis) | ||||
STRING | ORGLA03G0327100.1 | 4e-39 | (Oryza glaberrima) | ||||
STRING | OBART03G35680.1 | 3e-39 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23380.1 | 4e-15 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|