PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN545458.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 126aa    MW: 14587.6 Da    PI: 8.201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN545458.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.3e-20210432128
                NAM  32 evikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115
                        ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ +++ +++++nr+     +++g W+atg+   ++ k +++++g+k++L++   +a++
  KN545458.1_FGP001   2 DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATGSVAYICGKdHETVIGTKRVLTYK--SARS 91 
                        579*************8555554888*****9988766615779999656666679*************99667779********9..5666 PP

                NAM 116 gektdWvmheyrl 128
                        +e+ +W mhey +
  KN545458.1_FGP001  92 AEEDKWSMHEYVM 104
                        669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.1611126IPR003441NAC domain
SuperFamilySSF1019419.94E-212109IPR003441NAC domain
PfamPF023652.4E-919103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDFINEVDIM SFDPVKLIEK YKGYGENRWY FFTVRKPSKT KKKDEPNRKV VVDGVEEGSW  60
SATGSVAYIC GKDHETVIGT KRVLTYKSAR SAEEDKWSMH EYVMLDKSQL VCPKIDSHHS  120
QITAYQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN545458.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985661e-139AC098566.3 Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence.
GenBankAP0149661e-139AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-139CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.12e-39PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A0E0HDE32e-72A0A0E0HDE3_ORYNI; Uncharacterized protein
STRINGONIVA05G14200.13e-73(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-12NAC domain containing protein 94