PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN545008.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 275aa    MW: 30777.5 Da    PI: 6.5066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN545008.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS140.61.6e-43527534259
               GRAS  34 dgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdis 120
                        ++ p+q l + ++  L +rl++s ++ly al  ps+    + s+  aa++ f+++ P+l  +++t N+aI+ea+e e    + vHi+D++ s
  KN545008.1_FGP001   5 ADGPLQHLSKIIVDSLDHRLLSSIQGLYGALiDPSDYF--EKSTLRAAHHNFFKLNPYLSTGFVTINRAIMEAMEDEkvdlQVVHIVDLSCS 94 
                        567999**********************9985555444..35555567788**************************999999******865 PP

               GRAS 121 ..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnl 206
                          ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v  rle+l++++Lr       g a+a+++
  KN545008.1_FGP001  95 aaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqikfGVAVAISC 181
                        3389***************************....9**************************.799**********54444555******** PP

               GRAS 207 vlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                        +lq+h+ll                                           s  +++   ++L++++ l+P+++v++eq+adhn+  F +rf
  KN545008.1_FGP001 182 ALQMHHLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVIMEQDADHNTMLFRDRF 273
                        ***********************************************98666777778899******************************* PP

               GRAS 258 le 259
                         e
  KN545008.1_FGP001 274 NE 275
                        76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2741275IPR005202Transcription factor GRAS
PfamPF035145.6E-415275IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLTIADGPLQ HLSKIIVDSL DHRLLSSIQG LYGALIDPSD YFEKSTLRAA HHNFFKLNPY  60
LSTGFVTINR AIMEAMEDEK VDLQVVHIVD LSCSAAHPWQ WLKLLDDFHG RPGGAPELYL  120
TVLHDDNDFL ADMQSLLSKK AESLGVSFHF ISVIGRLETL DFSNLRSTFQ IKFGVAVAIS  180
CALQMHHLLL VDDNLSSTSI AQLQKMANFT QPKQMASSVC SPASTLNYLQ TPSPRTPKLL  240
ARLLSAIRAL KPNIMVIMEQ DADHNTMLFR DRFNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN545008.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
RefseqXP_015616661.10.0scarecrow-like protein 3 isoform X2
TrEMBLB8BJ110.0B8BJ11_ORYSI; Uncharacterized protein
STRINGOGLUM11G02230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-31scarecrow-like 3