PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN544572.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22517.2 Da PI: 6.5424 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.8 | 2.1e-11 | 5 | 42 | 4 | 41 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n++ r+vt+ k +g++KK ELS+LC ++++++++ KN544572.1_FGP001 5 TNNIVRKVTLRKCSAGLIKKVTELSILCSVKASIVVYN 42 68999*******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0039 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.194 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-13 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-11 | 5 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAKLTNNIVR KVTLRKCSAG LIKKVTELSI LCSVKASIVV YNIDETGDPV AWPSIEEAKD 60 MWSKLMDMPE AVQKKWMQDS KTLLQQQIMK LQKKLDNLKA ENYKREITNI ISELSAGLRK 120 NLDDLSPEMV KGVKLEVAKH REAIRNRIVE LRAQGASSSV VLAPQEEIVA PHAFQFDLNE 180 PAVVDDDPPI VREEVDLPCN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN544572.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0ME25 | 1e-118 | A0A0E0ME25_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G07320.1 | 1e-119 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16515 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 1e-13 | AGAMOUS-like 38 |